#MotifLabMotif   (inspired by INCLUSive Motif Model v1.0)

#Collection = JASPAR PBM_HLH
#Version = 2016

#Identifier[JASPAR] = [CN.+,http://jaspar.genereg.net/cgi-bin/jaspar_db.pl?&ID={ID}&rm=present&collection=CNE],[MF.+,http://jaspar.genereg.net/cgi-bin/jaspar_db.pl?&ID={ID}&rm=present&collection=FAM],[PB.+,http://jaspar.genereg.net/cgi-bin/jaspar_db.pl?&ID={ID}&rm=present&collection=PBM],[PL.+,http://jaspar.genereg.net/cgi-bin/jaspar_db.pl?&ID={ID}&rm=present&collection=PBM_HLH],[PH.+,http://jaspar.genereg.net/cgi-bin/jaspar_db.pl?&ID={ID}&rm=present&collection=PBM_HOMEO],[PF.+,http://jaspar.genereg.net/cgi-bin/jaspar_db.pl?&ID={ID}&rm=present&collection=PHYLOFACTS],[POL.+,http://jaspar.genereg.net/cgi-bin/jaspar_db.pl?&ID={ID}&rm=present&collection=POLII],[SA.+,http://jaspar.genereg.net/cgi-bin/jaspar_db.pl?&ID={ID}&rm=present&collection=SPLICE],[SD.+,http://jaspar.genereg.net/cgi-bin/jaspar_db.pl?&ID={ID}&rm=present&collection=SPLICE],http://jaspar.genereg.net/cgi-bin/jaspar_db.pl?&ID={ID}&rm=present&collection=CORE
#Identifier[TF encyclopedia] = http://cisreg.cmmt.ubc.ca/cgi-bin/tfe/articles.pl?tfid={ID}
#Identifier[PubMed] = http://www.ncbi.nlm.nih.gov/pubmed/{ID}
#Identifier[RefSeq] = [NP_.+,http://www.ncbi.nlm.nih.gov/protein/{ID}],http://www.ncbi.nlm.nih.gov/nuccore/{ID}
#Identifier[PAZAR] = http://www.pazar.info/cgi-bin/tf_search.cgi?geneID={ID}
#Identifier[UniProt] = http://www.uniprot.org/uniprot/{ID}
#Identifier[Ensembl] = [ENSG.+,http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g={ID}],[ENSMUSG.+,http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g={ID}],http://www.ensembl.org/Multi/Search/Results?species=all;idx=;q={ID}
#Identifier[Entrez] = http://www.ncbi.nlm.nih.gov/gene/{ID}

#ID = PL0001
#JASPAR = PL0001.1
#Short name = hlh-11
#Organisms = Caenorhabditis elegans
#TF family = Helix-Loop-Helix
#TF class = Zipper-type
#Evidence = PBM
#Factors = hlh-11
#PubMed = 19632181
#UniProt = P34474
#W = 16
32	15	18	34
25	31	12	31
22	27	19	30
24	14	40	20
73	7	16	2
20	7	1	70
2	94	1	1
94	1	1	2
1	4	90	3
4	88	5	1
2	6	1	89
1	1	93	4
60	2	12	24
14	20	20	44
18	41	26	13
21	16	34	28

#ID = PL0002
#JASPAR = PL0002.1
#Short name = hlh-2::hlh-3
#Organisms = Caenorhabditis elegans
#TF family = Helix-Loop-Helix
#TF class = Zipper-type
#Evidence = PBM
#Factors = hlh-2::hlh-3
#PubMed = 19632181
#UniProt = Q17588,Q22717
#W = 17
32	28	23	15
32	13	36	17
17	18	24	39
49	6	29	14
44	41	12	0
0	98	0	0
98	0	0	0
0	84	2	12
0	98	0	0
0	0	0	98
0	0	98	0
0	84	3	11
5	24	7	61
35	22	19	22
42	21	21	14
21	25	12	39
22	33	14	29

#ID = PL0003
#JASPAR = PL0003.1
#Short name = hlh-2::cnd-1
#Organisms = Caenorhabditis elegans
#TF family = Helix-Loop-Helix
#TF class = Zipper-type
#Evidence = PBM
#Factors = hlh-2::cnd-1
#PubMed = 19632181
#UniProt = P46581,Q17588
#W = 16
33	32	12	21
16	26	38	18
23	12	34	29
66	18	7	7
72	18	5	3
6	87	2	3
94	1	1	2
1	3	60	34
19	75	2	1
4	0	1	93
3	1	90	4
2	9	11	77
7	49	18	24
22	29	11	36
36	21	18	24
40	16	19	23

#ID = PL0004
#JASPAR = PL0004.1
#Short name = hlh-27
#Organisms = Caenorhabditis elegans
#TF family = Helix-Loop-Helix
#TF class = Zipper-type
#Evidence = PBM
#Factors = hlh-27
#PubMed = 19632181
#UniProt = Q18056
#W = 15
43	14	25	16
13	17	30	38
33	9	51	4
1	94	1	1
23	5	65	5
0	91	0	7
16	0	83	0
0	0	0	98
0	0	98	0
0	0	5	93
0	94	0	4
0	86	1	10
7	61	12	19
39	19	14	26
26	17	28	27

#ID = PL0005
#JASPAR = PL0005.1
#Short name = hlh-30
#Organisms = Caenorhabditis elegans
#TF family = Helix-Loop-Helix
#TF class = Zipper-type
#Evidence = PBM
#Factors = hlh-30
#PubMed = 19632181
#UniProt = P91527
#W = 17
38	18	16	26
21	24	30	22
36	11	20	31
61	4	23	10
5	6	4	83
0	96	0	1
94	1	1	2
0	85	0	13
13	0	85	0
2	1	1	94
1	0	96	0
83	4	6	5
0	63	0	34
36	21	14	26
38	19	18	23
28	10	22	39
21	25	24	29

#ID = PL0006
#JASPAR = PL0006.1
#Short name = hlh-2::lin-32
#Organisms = Caenorhabditis elegans
#TF family = Helix-Loop-Helix
#TF class = Zipper-type
#Evidence = PBM
#Factors = hlh-2::lin-32
#PubMed = 19632181
#UniProt = Q10574,Q17588
#W = 16
28	28	17	26
39	29	18	12
24	15	35	23
47	23	22	7
64	28	6	0
1	98	0	0
97	0	1	0
0	16	63	19
19	63	16	0
0	1	0	97
0	0	98	1
0	6	28	64
5	38	7	48
24	35	17	22
22	24	15	37
21	33	24	19

#ID = PL0007
#JASPAR = PL0007.1
#Short name = mxl-3
#Organisms = Caenorhabditis elegans
#TF family = Helix-Loop-Helix
#TF class = Zipper-type
#Evidence = PBM
#Factors = mxl-3
#PubMed = 19632181
#UniProt = Q18711
#W = 16
17	32	19	30
28	19	29	22
25	14	30	29
67	8	16	7
27	60	9	2
3	95	0	0
97	0	1	1
0	95	0	4
4	0	95	0
1	1	0	97
0	0	95	3
2	9	60	27
13	22	9	54
13	38	14	32
25	27	21	24
31	10	36	21

#ID = PL0008
#JASPAR = PL0008.1
#Short name = hlh-29
#Organisms = Caenorhabditis elegans
#TF family = Helix-Loop-Helix
#TF class = Zipper-type
#Evidence = PBM
#Factors = hlh-29
#PubMed = 19632181
#UniProt = Q19917
#W = 17
22	29	23	24
28	15	18	36
33	10	38	17
26	31	10	31
5	54	13	27
82	0	15	1
2	92	0	4
3	0	95	0
0	85	0	13
46	0	52	0
1	1	0	97
3	1	93	1
2	1	49	46
5	47	4	41
30	32	11	26
30	23	17	28
41	10	23	23

#ID = PL0009
#JASPAR = PL0009.1
#Short name = hlh-26
#Organisms = Caenorhabditis elegans
#TF family = Helix-Loop-Helix
#TF class = Zipper-type
#Evidence = PBM
#Factors = hlh-26
#PubMed = 19632181
#UniProt = Q18053
#W = 17
23	23	24	29
41	14	22	21
29	20	19	30
18	7	53	20
42	1	55	0
0	95	0	2
82	1	11	4
0	97	0	1
2	0	95	0
1	3	0	94
0	0	97	1
1	19	2	75
5	67	3	23
24	31	17	25
32	18	17	31
34	22	21	20
30	9	20	39

#ID = PL0010
#JASPAR = PL0010.1
#Short name = hlh-2::hlh-19
#Organisms = Caenorhabditis elegans
#TF family = Helix-Loop-Helix
#TF class = Zipper-type
#Evidence = PBM
#Factors = hlh-2::hlh-19
#PubMed = 19632181
#UniProt = Q17588,Q20941
#W = 16
21	12	31	33
23	23	24	27
17	10	23	47
53	12	25	8
56	32	8	3
3	93	1	1
94	1	2	1
1	9	63	25
10	51	36	0
3	2	0	92
2	1	92	4
2	6	33	57
8	38	14	39
40	39	7	12
25	32	17	24
26	25	23	24

#ID = PL0011
#JASPAR = PL0011.1
#Short name = hlh-2::hlh-4
#Organisms = Caenorhabditis elegans
#TF family = Helix-Loop-Helix
#TF class = Zipper-type
#Evidence = PBM
#Factors = hlh-2::hlh-4
#PubMed = 19632181
#UniProt = P34555,Q17588
#W = 17
44	23	18	13
53	8	26	11
28	9	7	54
53	0	1	43
22	29	18	28
0	98	0	0
98	0	0	0
0	92	5	2
0	99	0	0
0	0	0	99
0	0	98	0
0	69	4	25
8	17	6	67
25	28	19	27
36	18	23	21
24	23	18	33
16	30	21	31

#ID = PL0012
#JASPAR = PL0012.1
#Short name = hlh-2::hlh-8
#Organisms = Caenorhabditis elegans
#TF family = Helix-Loop-Helix
#TF class = Zipper-type
#Evidence = PBM
#Factors = hlh-2::hlh-8
#PubMed = 19632181
#UniProt = Q11094,Q17588
#W = 16
33	21	22	22
14	30	22	32
39	28	17	13
63	16	11	8
77	16	4	1
2	95	0	1
96	1	1	1
0	6	5	87
35	57	6	0
1	1	0	95
0	1	95	2
1	2	77	18
13	21	8	56
28	19	23	28
14	18	25	41
28	39	13	18

#ID = PL0013
#JASPAR = PL0013.1
#Short name = hlh-2::hlh-15
#Organisms = Caenorhabditis elegans
#TF family = Helix-Loop-Helix
#TF class = Zipper-type
#Evidence = PBM
#Factors = hlh-2::hlh-15
#PubMed = 19632181
#UniProt = Q17588,Q18590
#W = 16
32	15	35	16
25	22	33	18
46	40	6	6
21	38	34	5
1	95	0	1
94	0	0	4
0	38	54	6
5	78	13	1
1	1	1	96
0	1	95	2
5	26	42	25
9	3	71	15
13	40	24	21
16	55	12	15
29	50	12	6
7	12	19	60

#ID = PL0014
#JASPAR = PL0014.1
#Short name = mxl-1::mdl-1
#Organisms = Caenorhabditis elegans
#TF family = Helix-Loop-Helix
#TF class = Zipper-type
#Evidence = PBM
#Factors = mxl-1::mdl-1
#PubMed = 19632181
#UniProt = P90982,Q21663
#W = 16
16	22	15	45
30	18	23	27
28	11	27	33
45	12	23	17
7	42	42	7
0	98	0	0
98	0	0	1
0	96	0	3
2	0	97	0
0	1	0	98
0	0	98	0
10	42	41	5
11	19	32	36
45	18	18	17
32	19	17	30
19	29	25	25

#ID = PL0015
#JASPAR = PL0015.1
#Short name = hlh-2::hlh-14
#Organisms = Caenorhabditis elegans
#TF family = Helix-Loop-Helix
#TF class = Zipper-type
#Evidence = PBM
#Factors = hlh-2::hlh-14
#PubMed = 19632181
#UniProt = Q09961,Q17588
#W = 16
23	25	24	26
20	19	25	34
56	11	17	14
63	15	19	2
1	96	0	0
97	0	0	1
0	41	32	25
2	95	1	0
0	0	0	97
0	0	97	1
0	14	8	76
2	72	2	22
34	27	27	10
34	25	21	18
28	15	27	28
49	16	13	21

#ID = PL0016
#JASPAR = PL0016.1
#Short name = ref-1
#Organisms = Caenorhabditis elegans
#TF family = Helix-Loop-Helix
#TF class = Zipper-type
#Evidence = PBM
#Factors = ref-1
#PubMed = 19632181
#UniProt = Q22069
#W = 17
34	13	15	36
26	31	22	19
51	17	10	20
34	22	15	27
22	3	67	6
22	7	68	1
0	97	0	0
96	0	2	0
0	96	0	2
1	0	97	0
0	2	1	95
0	0	97	0
0	45	9	44
21	47	10	21
30	19	16	33
33	7	20	38
49	13	14	22

#ID = PL0017
#JASPAR = PL0017.1
#Short name = hlh-2::hlh-10
#Organisms = Caenorhabditis elegans
#TF family = Helix-Loop-Helix
#TF class = Zipper-type
#Evidence = PBM
#Factors = hlh-2::hlh-10
#PubMed = 19632181
#UniProt = Q17588,Q23579
#W = 17
21	32	23	23
24	30	16	27
20	15	39	24
16	24	30	28
74	13	9	2
81	8	9	0
0	99	0	0
99	0	0	0
0	0	98	0
1	15	83	0
0	0	0	99
0	0	98	0
1	23	38	37
11	19	24	44
21	35	25	17
16	24	29	29
33	18	28	19

#ID = PL0018
#JASPAR = PL0018.1
#Short name = hlh-25
#Organisms = Caenorhabditis elegans
#TF family = Helix-Loop-Helix
#TF class = Zipper-type
#Evidence = PBM
#Factors = hlh-25
#PubMed = 19632181
#UniProt = Q18054
#W = 16
38	18	25	17
32	18	31	16
13	17	48	20
39	4	53	2
0	97	0	0
21	1	75	2
0	88	0	10
15	0	84	0
0	0	0	98
0	0	99	0
0	0	10	89
0	94	0	4
1	84	1	12
10	52	8	28
31	23	16	28
22	14	31	30

#ID = PL0019
#JASPAR = PL0019.1
#Short name = hlh-1
#Organisms = Caenorhabditis elegans
#TF family = Helix-Loop-Helix
#TF class = Zipper-type
#Evidence = PBM
#Factors = hlh-1
#PubMed = 19632181
#UniProt = P22980
#W = 16
16	9	35	37
21	31	34	13
25	7	64	2
70	6	11	11
2	92	2	1
92	1	3	1
12	13	71	1
1	71	13	12
1	3	1	92
1	2	92	2
16	7	3	71
2	64	7	25
30	12	44	12
35	17	19	27
33	19	35	11
31	21	35	10

