#MotifLabMotif   (inspired by INCLUSive Motif Model v1.0)
#
#ID = S000392
#Short = -10PEHVPSBD
#W = 6
#Organisms = barley (Hordeum vulgare)
#Description = "-10 promoter element" found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A light;
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000335
#Short = -141NTG13
#W = 21
#Organisms = tobacco (Nicotiana tabacum)
#Description = "-141 sequence"; Binding site of tobacco (N.t.) TGA1a-related protein,PG13, found in the G13 gene promoter; PG13 (Protein encoded by G13) shows high homology to TGA1a; ASF-1, PG13, and TGA1a bind to the same target sequence in the 5' upstream region of G13 suggesting that autoregulation of transcription may involved in the control of G13 expression; TGA1a is preferentially expressed in root tip meristems; TGA1a may contribute to the expression of GST isoenzymes, especially in root tip meristems;
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000285
#Short = -284MOTIFZMSBE1
#W = 30
#Organisms = maize (Zea mays)
#Description = Located between -284 and -255 region of maize (Z.m.) Sbe1 gene promoter; Critical positive cis element; Important for the high-level, sugar-responsive expression of the Sbe1 gene in maize endosperm cells; Recognized by nuclear protein; See S000284;
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0

#ID = S000001
#Short = -300CORE
#W = 7
#Organisms = maize (Zea mays),wheat (Triticum aestivum),barley (Hordeum vulgare),tobacco (Nicotiana tabacum)
#Description = "TGTAAAG core motif" in "-300 elements" of alpha-zein genes of maize; "-300 element core"; "prolamin box" by Vicente-Carbajosa et al. (Proc Natl Acad Sci USA 94:7685 (1997)); P-box; Binds with P-box binding factor (PBF); Binds with BPBF (Barley PBF); PBF is a DNA-binding protein of the DOF class of transcription factors;
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0

#ID = S000122
#Short = -300ELEMENT
#W = 8
#Organisms = wheat (Triticum aestivum)
#Description = Present upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIF;
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.3333333333333333	0.3333333333333333	0.0	0.3333333333333333
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.5	0.0	0.5	0.0
0.0	0.0	0.5	0.5

#ID = S000002
#Short = -300MOTIFZMZEIN
#W = 9
#Organisms = maize (Zea mays)
#Description = Motif in -300 elements of alpha-zein genes of maize (Z.m.); homologous to the sequence to which transacting factors of AP-1, fos, jun or yeast hisS bind;
0.5	0.0	0.5	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000284
#Short = -314MOTIFZMSBE1
#W = 20
#Organisms = maize (Zea mays)
#Description = Located between -314 and -295 region of maize (Z.m.) Sbe1 gene promoter; Critical positive cis element; Important for the high-level, sugar-responsive expression of the Sbe1 gene in maize endosperm cells; Recognized by nuclear protein; See S000285;
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000412
#Short = 14BPATERD1
#W = 14
#Organisms = Arabidopsis thaliana
#Description = "14 bp region" (from -599 to -566) necessary for expression of erd1 (early responsive to dehydration) in dehydrated Arabidopsis;
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000312
#Short = 20NTNTNOS
#W = 20
#Organisms = tobacco (Nicotiana tabacum)
#Description = "20nt (20 nucleotide sequence)" found in the promoter on tobacco (N.t.) nopalin synthase (nos) gene promoter; Containing two hexamer motifs (TGAGCT) and a spacer region; The spacer region between two hexamer motifs is essential; Important for the gene expression; Essential for response to wounding, auxin, MJ, and SA; Very similar to ASF-1 binding site (See S000073); See S000053(ACGTCA);
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000283
#Short = 23BPUASNSCYCB1
#W = 23
#Organisms = tobacco (Nicotiana sylvestris)
#Description = "23 bp UAS (Upstream activating sequence)" found in the promoter of Nicotiana sylvestris (N.s.) CycB1 gene; Located between -386 and -409; Contains a 5 bp element identical to the MYB binding core (ACGT); Required for M-phase-specific expression; Binds protein complexes in a cell cycle-regulated manner;
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0

#ID = S000341
#Short = 23BPZM27KDAZEIN
#W = 23
#Organisms = maize (Zea mays)
#Description = 23 bp sequence found in the maize (Z.m.) gamma-class 27kDa zein gene promoter; Contains -300 element (also called the endosperm box or prolamin box); Binding site of nuclear protein; Confers a high level of transcriptional activity in an orientation-dependent manner; -300 element is involved in the common regulatory mechanisms mediating the coordinated expression of the zein genes;
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000286
#Short = 27BPDRCONSENSUSPS25S
#W = 27
#Organisms = pea (Pisum sativum)
#Description = The consensus sequence of 27 bp imperfect repeats found in the untrascribed spacer close to the 3'end of the pea (P.s.) 25S gene; Involved in the rDNA replication fork barrier; Nuclear protein(s) specifically bound to this repeat; W=T/A; M=A/C;
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.5	0.0	0.0	0.5
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.5	0.5	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000143
#Short = 2SSEEDPROTBANAPA
#W = 7
#Organisms = Brassica napus
#Description = Conserved in many storage-protein gene promoters; May be important for high activity of the napA promoter;
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000004
#Short = 3AF1BOXPSRBCS3
#W = 21
#Organisms = pea (Pisum sativum)
#Description = "3AF1 binding site"; tetramer in the light-responsive promoter of pea (P.s.) rbcS-3A gene; "Box VI"; One of "AT-rich sequences" which have been found in numerous light-regulated promoters (Terzaghi & Cashmore, 1995); 3AF1 site includes a GATA motif;
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0

#ID = S000279
#Short = 5256BOXLELAT5256
#W = 12
#Organisms = tomato (Lycopersicon esculentum)
#Description = "52/56 box"; A sequence motif shared between the tomato (L.e.) LAT(Late Anther Tomato)52 and LAT56 promoters; Encompassing "PB core motif" (TGTGGTT), and is closely related to the box II sequence motif in the pea rbcS-3A gene promoter; Involved in modulating the activity of the LAT gene promoters in pollen; Dispensable for the developmental regulation of the LAT52 gene in pollen; 52/56 box may be a target for the binding of a member of the GT-1 transcription factor family;
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0

#ID = S000280
#Short = 5659BOXLELAT5659
#W = 10
#Organisms = tomato (Lycopersicon esculentum)
#Description = "56/59 box"; A sequence motif shared between the tomato (L.e.) LAT(Late Anther Tomato)56 and LAT59 promoters; Found in -103 to -94 in LAT56 and in -114 to -105 in LAT59; Involved in modulating the activity of the LAT gene promoters in pollen; W=A/T;
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.5	0.0	0.0	0.5
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0

#ID = S000353
#Short = AACACOREOSGLUB1
#W = 7
#Organisms = rice (Oryza sativa)
#Description = Core of AACA motifs found in rice (O.s.) glutelin genes, involved in controlling the endosperm-specific expression; AACA is also closely associated with the GCN4 motif in all rice glutelin genes and together have been shown to confer endosperm-specific enhancement to the truncated -90 CaMV 35S promoter; See also S000045, S000181, S000276;
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000276
#Short = AACAOSGLUB1
#W = 14
#Organisms = rice (Oryza sativa)
#Description = "AACA motif" found in GluB-1 gene in rice (O.s.); Required for endosperm-specific expression; Highly conserved in the 5'-flanking region of glutelin genes; See S000277;
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0

#ID = S000344
#Short = AAGACGTAGATACL12
#W = 9
#Organisms = Arabidopsis thaliana
#Description = Sequence found in Arabidopsis (A.t.) acyl carrier protein (ACP), Acl1.2, gene promoter; Contains bZIP core motif (ACGT);
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0

#ID = S000007
#Short = ABADESI1
#W = 10
#Organisms = rice (Oryza sativa)
#Description = Responsive to ABA and desiccation; "Motif I" of rice rab16A-D (initially called rab-21); Expressed in seeds late during embryogenesis; Induced by ABA and osmotic stress in vegetative tissues; Contains ACGT motif; transacting factor: TAF-1;
0.5	0.0	0.5	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.5	0.0	0.5	0.0

#ID = S000008
#Short = ABADESI2
#W = 11
#Organisms = rice (Oryza sativa),wheat (Triticum aestivum)
#Description = Synthetic element (hex-3) related to response to ABA and to desiccation; seed expression; Gene: synthetic; hex-3, mutant of hex-1 sequence from wheat histone H3 promoter; transacting factor: bZIP ?;
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0

#ID = S000009
#Short = ABAREG2
#W = 11
#Organisms = sunflower (Helianthus annuus)
#Description = Motif related to ABA regulation; Gene: sunflower helianthinin; transacting factor: bZIP ?
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0

#ID = S000011
#Short = ABASEED1
#W = 11
#Organisms = carrot (Daucus carota)
#Description = ABA regulation; seed expression; Gene: carrot Dc3; Transacting factor: bZIP ?; Contains ACGT motif;
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000190
#Short = ABFOS
#W = 19
#Organisms = RTBV,rice tungro bacilliform virus,rice (Oryza sativa)
#Description = ABF (as-1-like box binding factor) binding site; as-1-like (ASL) box is found at -98 to -79 of RTBV (rice tungro bacilliform virus) promoter; ASL box is required for phloem-specific gene expression of Rice Tungro Bacilliform Virus (RTBV); See also RNFG1OS (S000188), and RNFG2OS (S000189); See as-1 (S000023);
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0

#ID = S000134
#Short = ABRE2HVA1
#W = 12
#Organisms = barley (Hordeum vulgare)
#Description = ABA responsive element, ABRE2, found in barley (H.v.) HVA1 gene encoding a class 3 late embryogenesis-abundant protein; stress response;
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0

#ID = S000117
#Short = ABRE2HVA22
#W = 10
#Organisms = barley (Hordeum vulgare)
#Description = "ABRE2" of barley HVA22 gene; G-box; component of ABA response complex in HVA22 gene; see S0118 (ABRE3 of HVA22 gene); see CE1 (coupling element 1 = TGCCACCGG); See S000014;
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0

#ID = S000135
#Short = ABRE3HVA1
#W = 10
#Organisms = barley (Hordeum vulgare)
#Description = ABA responsive element, ABRE3, found in barley (H.v.) HVA1 gene encoding a class 3 late embryogenesis-abundant protein; stress response;
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0

#ID = S000118
#Short = ABRE3HVA22
#W = 10
#Organisms = barley (Hordeum vulgare)
#Description = "ABRE3" of barley HVA22 gene; Newly designated "A3" by Shen et al., Plant Cell 8:1107 (1996); G-box; component of ABA response complex in HVA22 gene; see S0117 (ABRE2 of HVA22 gene); see CE1 (coupling element 1 = TGCCACCGG); See S000014; ABA response complex 1(ABRC1)=A3(previously designated ABRE3)+CE1 (Shen et al., Plant Cell 8:1107(1996));
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000120
#Short = ABRE3OSRAB16
#W = 11
#Organisms = rice (Oryza sativa)
#Description = ABA-responsive element of rice (O.s.) rab16 and alpha-amylase genes;
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0

#ID = S000140
#Short = ABREA2HVA1
#W = 10
#Organisms = barley (Hordeum vulgare)
#Description = A2 of ABRC3; ABRC3 (ABA response complex 3) of HVA1 consists of CE3 and A2; ABA responsive element; stress response; Found in barley HVA1 gene encoding a class 3 late embryogenesis-abundant (Lea) protein; ABRC1 OF HVA22 consists of CE1 and A3; CE1=S000014; A3=ABRE3=S000118; See S000118;
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0

#ID = S000406
#Short = ABREATCONSENSUS
#W = 8
#Organisms = Arabidopsis thaliana
#Description = ABA-responsive elements (ABREs) found in the promoter of ABA and/or stress-regulated genes; ABFs, a family of ABRE binding factors; ABF3 and ABF4 function in ABA signaling; Y=C/T;
0.0	0.5	0.0	0.5
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0

#ID = S000013
#Short = ABREATRD22
#W = 10
#Organisms = Arabidopsis thaliana
#Description = "ABRE (ABA responsive element)" in Arabidopsis (A.t.) dehydration-responsive gene rd22; R=A/G; Y=C/T;
0.5	0.0	0.5	0.0
0.0	0.5	0.0	0.5
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.5	0.0	0.5
0.5	0.0	0.5	0.0

#ID = S000218
#Short = ABREAZMRAB28
#W = 10
#Organisms = maize (Zea mays)
#Description = ABA-responsive element (ABRE A) found at -148 to -139 in maize rab28 (Busk & Pages, 1997); Maize rab28 is ABA-inducible in embryos and vegetative tissues;
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0

#ID = S000145
#Short = ABREBNNAPA
#W = 12
#Organisms = Brassica napus
#Description = ABRE of napA storage-protein gene of Brassica napus (B.n.); ABA responsive element; dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABRE; B3 domain of ABI3 interacts with the RY/G complex;
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000219
#Short = ABREBZMRAB28
#W = 10
#Organisms = maize (Zea mays)
#Description = ABA-responsive element (ABRE B) found at -105 to -96 in maize (Z.m.) rab28 (Busk & Pages, 1997); Maize rab28 is ABA-inducible in embryos and vegetative tissues;
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0

#ID = S000014
#Short = ABRECE1HVA22
#W = 9
#Organisms = barley (Hordeum vulgare)
#Description = CE1(coupling element 1) of barley HVA22 gene; possible binding site for nuclear bZIP protein; ABA responsive complex consists of a G-box, namely ABRE3 (GCCACGTACA), and CE1;
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0

#ID = S000141
#Short = ABRECE3HVA1
#W = 12
#Organisms = barley (Hordeum vulgare)
#Description = CE3 (coupling element 3) of ABRC3 in barley HVA1 gene; ABRC3 (ABA response complex 3) of HVA1 consists of CE3 and A2; ABA responsive element; stress response; Found in barley HVA1 gene encoding a class 3 late embryogenesis-abundant (Lea) protein; ABRC1 OF HVA22 consists of CE1 and A3; CE1=S000014; A3=ABRE3=S000118; See S000118;
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0

#ID = S000221
#Short = ABRECE3ZMRAB28
#W = 12
#Organisms = maize (Zea mays)
#Description = CE3 (coupling element 3) in maize (Z.m.) rab28 gene promoter; ABA responsive element; stress response; Similar (10 of 12) to CE3 in A1 gene of barley; See S000141 (ABRECE3HVA1); Found at -126 to -115;
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0

#ID = S000262
#Short = ABREDISTBBNNAPA
#W = 10
#Organisms = Brassica napus
#Description = "dist B (distal portion of B-box)" found in napA gene of Brassica napus (B.n.); Shows similarity to ABRE; Found between -148 and -124; Required for seed specific expression and ABA responsiveness; See S000263, S000264; dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABRE;
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0

#ID = S000414
#Short = ABRELATERD1
#W = 5
#Organisms = Arabidopsis thaliana
#Description = ABRE-like sequence (from -199 to -195) required for etiolation-induced expression of erd1 (early responsive to dehydration) in Arabidopsis;
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0

#ID = S000299
#Short = ABREMOTIFAOSOSEM
#W = 8
#Organisms = rice (Oryza sativa)
#Description = "motif A" ABRE-like sequence found in rice (O.s.) Osem gene promoter; Essential for activation by VP1; Important for regulation by ABA; See S000102, S000300; TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption;
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0

#ID = S000291
#Short = ABREMOTIFIIIOSRAB16B
#W = 10
#Organisms = rice (Oryza sativa)
#Description = "Motif III" found in the promoter of rice (O.s.) rab16B gene; Motif I (S000290) and motif III are both required for ABA responsiveness; However, each can substitute for the other;
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0

#ID = S000290
#Short = ABREMOTIFIOSRAB16B
#W = 10
#Organisms = rice (Oryza sativa)
#Description = "Motif I" found in the promoter of rice (O.s.) rab16B gene; Motif I and motif III (S000291) are both required for ABA responsiveness; However, each can substitute for the other; See S000019, S000120;
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0

#ID = S000012
#Short = ABREOSRAB21
#W = 8
#Organisms = rice (Oryza sativa),wheat (Triticum aestivum)
#Description = "ABA responsive element (ABRE)" of wheat Em and rice (O.s.) rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em gene; S=C/G;
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.5	0.5	0.0
0.0	0.5	0.5	0.0
0.0	0.5	0.5	0.0
0.0	1.0	0.0	0.0

#ID = S000507
#Short = ABRERATCAL
#W = 7
#Organisms = Arabidopsis thaliana
#Description = "ABRE-related sequence" or "Repeated sequence motifs" identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE; M=C/A; Y=T/C; B=T/C/G;
0.5	0.5	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.5	0.0	0.5
0.0	0.0	1.0	0.0
0.0	0.3333333333333333	0.3333333333333333	0.3333333333333333

#ID = S000015
#Short = ABRETAEM
#W = 11
#Organisms = wheat (Triticum aestivum)
#Description = "ABRE (ABA responsive element)" found in wheat (T.a.) Em gene; transacting factor: EMBP-1; EMBP-1 binds to CACGTGGC; See S000119 EMBP1;
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0

#ID = S000133
#Short = ABREZMRAB28
#W = 8
#Organisms = maize (Zea mays),Arabidopsis thaliana,rice (Oryza sativa),Populus spp.
#Description = ABRE; ABA and water-stress responses; Found in maize (Z.m.) rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; "ABRE2"; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA;  Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0

#ID = S000355
#Short = ACEATCHS
#W = 10
#Organisms = Arabidopsis thaliana
#Description = "ACEAtCHS (ACGT containing element)" found in the LRU (light-responsive unit) in Arabidopsis (A.t.) chalcone synthase (CHS) gene promoter; Required for UV-B and UV-1/blue light responsiveness; See S000356; Transcriptional repression by AtMYB4 controls production of UV-protecting sun screens in Arabidopsis; AtMYB4 mutant shows enhanced levels of sinapate ester in leaves and tolerance of UV-B irradiation; AtMYB4 expression is downregulated by exposure to UV-B light;
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0

#ID = S000130
#Short = ACGTABOX
#W = 6
#Organisms = plant,rice (Oryza sativa)
#Description = "A-box" according to the nomenclature of ACGT elements by Foster et al. (FASEB J 8:192-200 (1994)); One of ACGT elements; Found in ocs gene; RITA-1 binding site (Izawa et al. 1994); "G motif" by Toyofuku et al. (1998); G motif and TATCCAY motif (a GATA motif as its antisense sequence;  see S000256) are responsible for sugar repression (Toyofuku et al. 1998); See S000346;
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0

#ID = S000394
#Short = ACGTABREMOTIFA2OSEM
#W = 7
#Organisms = rice (Oryza sativa),Arabidopsis thaliana
#Description = Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; See S000281; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis;  K=G/T;
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.5	0.5
0.0	1.0	0.0	0.0

#ID = S000281
#Short = ACGTABREMOTIFAOSOSEM
#W = 8
#Organisms = rice (Oryza sativa)
#Description = "ABRE motif A" found in the promoter of the rice (O.s.) Osem gene; ACGT-containing ABRE; Required for ABA-responsiveness and VP1 activation; Binding site of TRAB1; Motif A and CE3 (S000282) are functionally equivalent; TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption;
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0

#ID = S000415
#Short = ACGTATERD1
#W = 4
#Organisms = Arabidopsis thaliana
#Description = ACGT sequence (from -155 to -152) required for etiolation-induced expression of erd1 (early responsive to dehydration) in Arabidopsis;
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0

#ID = S000131
#Short = ACGTCBOX
#W = 6
#Organisms = plant
#Description = "C-box" according to the nomenclature of ACGT elements by Foster et al. (FASEB J 8:192-200 (1994)); One of ACGT elements; Factors groups 1, 2 and 3 have affinity for C-box (Izawa et al. J Mol Biol. 230:1131-1144 (1993)); RITA-1 binding site (Izawa et al. 1994);
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0

#ID = S000278
#Short = ACGTOSGLUB1
#W = 7
#Organisms = rice (Oryza sativa)
#Description = "ACGT motif" found in GluB-1 gene in rice (O.s.); Required for endosperm-specific expression; Conserved in the 5'-flanking region of glutelin genes; See S000276, S000277; See S000019;Combination of GCN4, AACA and ACGT motifs was found sufficient to confer a detectable level of endosperm expression; See S000353, S000354;
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0

#ID = S000016
#Short = ACGTROOT1
#W = 10
#Organisms = tobacco (Nicotiana tabacum),soybean (Glycine max)
#Description = "ACGT motif" related to root expression; Gene: synthetic; perfect palindromic sequence (PA) containing G-box-related sequence; transacting factor: TAF-1 ?; Binding of SGBF-1 (a Soybean G-box binding bZIP transcription factor) to ABRE is enhanced by SCOF-1 (a zinc finger protein ); Transcription of SCOF-1 is induced by low temperature and ABA;
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0

#ID = S000018
#Short = ACGTSEED2
#W = 11
#Organisms = French bean,bean (Phaseolus vulgaris)
#Description = "ACGT motif" related to seed expression; Gene: French bean phaseolin; transacting factor: 02;
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000019
#Short = ACGTSEED3
#W = 10
#Organisms = tobacco
#Description = "ACGT motif" related to seed expression; Gene: synthetic; wild-type motif (Iwt) containing G-box-related sequence; transacting factor: bZIP ?; A tobacco bZip transcription activator (TAF-1) binding site;
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0

#ID = S000132
#Short = ACGTTBOX
#W = 6
#Organisms = plant
#Description = "T-box" according to the nomenclature of ACGT elements by Foster et al. (FASEB J 8:192-200 (1994)); One of ACGT elements; See also ACGTABOX (S000130), ACGTCBOX (S000131), and CACGTGMOTIF (S000042);
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0

#ID = S000194
#Short = ACIIIPVPAL2
#W = 9
#Organisms = bean (Phaseolus vulgaris),Pinus taeda (loblolly pine)
#Description = ACIII element found at -246 to -238 of bean (P.v.) PAL2 promoter; ACIII element is required for vascular-specific gene expression; See also ACIPVPAL2 (S000192) and ACIIPVPAL2 (S000193); Three AC-elements, which are possible Myb protein binding sites, together with a G-box, interact to direct the complex patterns of tissu-specific expression of pAL2 gene; Implicated in the xylem-localized regulation of genes encoding lignin biosynthetic enzymes in loblolly pine (Patzlaff et al., 2003);
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0

#ID = S000193
#Short = ACIIPVPAL2
#W = 12
#Organisms = bean (Phaseolus vulgaris),Pinus taeda (loblolly pine)
#Description = ACII element found at -131 to -120 of bean (P.v.) PAL2 promoter; ACII element is required for vascular-specific gene expression; See also ACIPVPAL2 (S000192) and ACIIIPVPAL2 (S000194); Three AC-elements, which are possible Myb protein binding sites, together with a G-box, interact to direct the complex patterns of tissu-specific expression of pAL2 gene; Implicated in the xylem-localized regulation of genes encoding lignin biosynthetic enzymes in loblolly pine (Patzlaff et al., 2003);
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000192
#Short = ACIPVPAL2
#W = 10
#Organisms = Phaseolus vulgaris(bean),Pinus taeda (loblolly pine)
#Description = ACI element found at -83 to -74 of bean (P.v.) PAL2 promoter; AC-rich element; ACI element is required for vascular-specific gene expression; See also ACIIPVPAL2 (S000193) and ACIIIPVPAL2 (S000194); Three AC-elements, which are possible Myb protein binding sites, together with a G-box, interact to direct the complex patterns of tissue-specific expression of pAL2 gene; Implicated in the xylem-localized regulation of genes encoding lignin biosynthetic enzymes in loblolly pine (Patzlaff et al., 2003);
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000342
#Short = AGAMOUSATCONSENSUS
#W = 16
#Organisms = Arabidopsis thaliana
#Description = Binding consensus sequence of Arabidopsis (A.t.) AGAMOUS MADS domain; MCM1 binding-sites in a-mating-type-specific promoters of Saccharomyces cerevisiae show similarities with the binding-site sequence of the AGAMOUS MADS domain; See S000316; MADS domain and I region of AGAMOUS are sufficient and necessary for DNA binding; Both the K domain and C region are indispensable for AG function in flower development; See S000338;
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.3333333333333333	0.0	0.3333333333333333	0.3333333333333333
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.5	0.0	0.0	0.5
0.5	0.0	0.0	0.5
0.5	0.0	0.0	0.5
0.5	0.0	0.0	0.5
0.5	0.0	0.0	0.5
0.5	0.0	0.0	0.5
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.3333333333333333	0.3333333333333333	0.0	0.3333333333333333
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000316
#Short = AGATCONSENSUS
#W = 15
#Organisms = Arabidopsis (Arabidopsis thaliana)
#Description = Binding consensus sequence for the product of the Arabidopsis (A.t.) floral homeotic gene AGAMOUS (AG); AG protein contains a region similar to the DNA binding domain of SRF and MCM1; The consensus sequence contains a CArG box; AG protein is a putative transcription factor for floral genes; H=A/T/C; W=A/T; See S000342; MADS domain and I region of AGAMOUS are sufficient and necessary for DNA binding; Both the K domain and C region are indispensable for AG function in flower development; See S000338;
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.5	0.0	0.0	0.5
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.5	0.0	0.0	0.5
0.5	0.0	0.0	0.5
0.5	0.0	0.0	0.5
0.5	0.0	0.0	0.5
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.5	0.0	0.0	0.5
0.5	0.0	0.0	0.5

#ID = S000232
#Short = AGCBOXNPGLB
#W = 7
#Organisms = tobacco (Nicotiana plumbaginifolia),Arabidopsis (Arabidopsis thaliana),tobacco (Nicotiana sylvestris),Oryza sativa,rice
#Description = "AGC box" repeated twice in a 61 bp enhancer element in tobacco (N.p.) class I beta-1,3-glucanase (GLB) gene; See S000036, S000089; "GCC-box"; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC box;
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000338
#Short = AGL1ATCONSENSUS
#W = 18
#Organisms = Arabidopsis thaliana
#Description = Binding consensus sequence of Arabidopsis (A.t.) AGL1 (AGAMOUS-like 1); AGL1 contains MADS domain; See S000339; AGL20 is a MADS domain gene from Arabidopsis that is activated in shoot apical meristem during the transition to flowering; AGL20 is also regulated by the Gibberellin pathway; Complex regulatory net works involving several MADS-genes underlie development of vegetative structures;
0.25	0.25	0.25	0.25
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.3333333333333333	0.0	0.3333333333333333	0.3333333333333333
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.5	0.0	0.0	0.5
0.5	0.0	0.0	0.5
0.5	0.0	0.0	0.5
0.5	0.0	0.0	0.5
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.5	0.0	0.0	0.5
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.25	0.25	0.25	0.25

#ID = S000339
#Short = AGL2ATCONSENSUS
#W = 18
#Organisms = Arabidopsis thaliana
#Description = Binding consensus sequence of Arabidopsis (A.t.) AGL2 (AGAMOUS-like 2); AGL2 contains MADS domain; AGL2 binds DNA as a dimer; See S000338;
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.5	0.0	0.0	0.5
0.25	0.25	0.25	0.25
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.5	0.0	0.0	0.5
0.5	0.0	0.0	0.5
0.5	0.0	0.0	0.5
0.5	0.0	0.0	0.5
0.0	0.0	0.0	1.0
0.5	0.0	0.5	0.0
0.0	0.0	1.0	0.0
0.5	0.0	0.0	0.5
0.5	0.0	0.0	0.5
1.0	0.0	0.0	0.0
0.25	0.25	0.25	0.25

#ID = S000343
#Short = AGL3ATCONSENSUS
#W = 16
#Organisms = Arabidopsis thaliana
#Description = Binding consensus sequence of Arabidopsis(A.t.) AGL3; AGL3 is MADS-box domain protein; AGL3 is expressed in all above-ground vegetative organs; AGL3 may be involved the transcriptional regulation of genes;
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.5	0.0	0.0	0.5
0.0	1.0	0.0	0.0
0.0	0.5	0.0	0.5
1.0	0.0	0.0	0.0
0.5	0.0	0.0	0.5
0.5	0.0	0.0	0.5
0.5	0.0	0.0	0.5
0.5	0.0	0.0	0.5
0.0	0.0	0.0	1.0
0.5	0.0	0.5	0.0
0.0	0.0	1.0	0.0
0.5	0.0	0.0	0.5
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000444
#Short = AGMOTIFNTMYB2
#W = 8
#Organisms = Nicotiana tabacum (tobacco)
#Description = AG-motif found at -114 of the promoter of NtMyb2 gene; NtMyb2 is a regulator of the tobacco retrotransposon Tto1 and the defence-related gene phenylalanine ammonia lyase (PAL), which are induced by various stress such as wounding or elicitor treatment; AGP1 (GATA-type zinc finger protein) binding site;
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000258
#Short = AGTACSAO
#W = 28
#Organisms = pumpkin (Cucurbita sp.)
#Description = "AGTA repeat" in pumpkin (C.s.) ascorbate oxidase gene (AO) promoter; Found in silencer region; AOBP (AGTA repeat binding protein) binding site; AOBP protein has DOF domain; Required for repression of expression of AO gene;
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0

#ID = S000238
#Short = ALF1NTPARC
#W = 17
#Organisms = tobacco (Nicotiana tabacum)
#Description = "ALF-1 (as-1-like sequence binding factor)" binding site found in tobacco (N.t.) parC gene; Found in auxin-responsive regions; as-1-like sequences in parA, parB and parC bind with ASF-1, ALF-2, and ALF-1, respectively; See S000190 (ABFOS);
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000239
#Short = ALF2NTPARB
#W = 18
#Organisms = tobacco (Nicotiana tabacum)
#Description = "ALF-2 (as-1-like sequence binding factor 2)" binding site found in tobacco (N.t.) parB gene; Found in auxin-responsive regions; as-1-like sequences in parA, parB and parC bind with ASF-1, ALF-2, and ALF-1, respectively; See S000190 (ABFOS);
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0

#ID = S000374
#Short = AMMORESIIUDCRNIA1
#W = 8
#Organisms = Chlamydomonas reinhardtii
#Description = Motifs (IIU and IID) found in the Chlamydomonas (C.R.) Nia1 gene promoter; Involved in ammonium-response; Located between -231 and -219 and also between -76 and -65; Involved in Nia1 transcription activation; W=T/A;
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.5	0.0	0.0	0.5
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0

#ID = S000375
#Short = AMMORESIVDCRNIA1
#W = 7
#Organisms = Chlamydomonas reinhardtii
#Description = Motif (IVD) found in the Chlamydomonas (C.R.) Nia1 gene promoter; Located between    -51 and -42; Involved in Nia1 transcription repression;
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0

#ID = S000376
#Short = AMMORESVDCRNIA1
#W = 9
#Organisms = Chlamydomonas reinhardtii
#Description = Motif (VD) found in the Chlamydomonas (C.R.) Nia1 gene promoter; Located between    -33 and -8; Involved in Nia1 transcription activation;
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0

#ID = S000020
#Short = AMYBOX1
#W = 7
#Organisms = barley (Hordeum vulgare),rice (Oryza sativa),wheat (Triticum aestivum)
#Description = "amylase box"; Conserved sequence found in 5'-upstream region of alpha-amylase gene of rice, wheat, barley;
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.5	0.0	0.5	0.0
1.0	0.0	0.0	0.0

#ID = S000021
#Short = AMYBOX2
#W = 7
#Organisms = barley (Hordeum vulgare),rice (Oryza sativa),wheat (Triticum aestivum)
#Description = "amylase box"; "amylase element"; Conserved sequence found in 5'upstream region of alpha-amylase gene of rice, wheat, barley; "amylase box" (Huang et al. 1990); "amylase element" (Hwang et al., 1998);
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000477
#Short = ANAERO1CONSENSUS
#W = 7
#Organisms = Zea mays (maize),Arabidopsis thaliana,Pisum sativum (pea),Hordeum vulgare (barley),Oryza sativa (rice),Petunia hybrida (petunia),Lycopersicon esculentum (tomato)
#Description = One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1)(Mohanty et al., 2005); Arbitrary named ANAERO1CONSENSUS by the PLACEdb curator; See also S000478, S000479, S000480, S000481;
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000478
#Short = ANAERO2CONSENSUS
#W = 6
#Organisms = Zea mays (maize),Arabidopsis thaliana,Pisum sativum (pea),Hordeum vulgare (barley),Oryza sativa (rice),Petunia hybrida (petunia),Lycopersicon esculentum (tomato)
#Description = One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1)(Mohanty et al., 2005); Arbitrary named ANAERO2CONSENSUS by the PLACEdb curator; See also S000477, S000479, S000480, S000481;
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0

#ID = S000479
#Short = ANAERO3CONSENSUS
#W = 7
#Organisms = Zea mays (maize),Arabidopsis thaliana,Pisum sativum (pea),Hordeum vulgare (barley),Oryza sativa (rice),Petunia hybrida (petunia),Lycopersicon esculentum (tomato)
#Description = One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1)(Mohanty et al., 2005); Arbitrary named ANAERO3CONSENSUS by the PLACEdb curator; See also S000477, S000478, S000480, S000481;
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000480
#Short = ANAERO4CONSENSUS
#W = 9
#Organisms = Zea mays (maize),Arabidopsis thaliana,Pisum sativum (pea),Hordeum vulgare (barley),Oryza sativa (rice),Petunia hybrida (petunia),Lycopersicon esculentum (tomato)
#Description = One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1)(Mohanty et al., 2005); Arbitrary named ANAERO4CONSENSUS by the PLACEdb curator; See also S000477, S000478, S000479, S000481; H=A/T/C;
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.3333333333333333	0.3333333333333333	0.0	0.3333333333333333
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000481
#Short = ANAERO5CONSENSUS
#W = 9
#Organisms = Zea mays (maize),Arabidopsis thaliana,Pisum sativum (pea),Hordeum vulgare (barley),Oryza sativa (rice),Petunia hybrida (petunia),Lycopersicon esculentum (tomato)
#Description = One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1)(Mohanty et al., 2005); Arbitrary named ANAERO5CONSENSUS by the PLACEdb curator; See also S000477, S000478, S000479, S000480;
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0

#ID = S000350
#Short = ANAEROBICCISZMGAPC4
#W = 20
#Organisms = maize (Zea mays)
#Description = 20 bp anaerobic cis-regulatory sequence found in the maize (Z.m.) GapC4 (Glyceraldehyde-3-phosphate dehydrogenase 4) gene promoter; Located between -286 and -266; Required for anaerobic gene expression in transgenic tobacco; See S000351;
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0

#ID = S000022
#Short = ARE1
#W = 11
#Organisms = rat
#Description = "ARE (antioxidant response element)"; antioxidant response element of rat glutathione S-transferase Ya subunit, and rat NAD(P)H:quinone reductase genes;
0.5	0.0	0.5	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0

#ID = S000393
#Short = ARECOREZMGAPC4
#W = 10
#Organisms = maize (Zea mays)
#Description = Putative binding site for a Myb found in the promoter of maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene; Essential for anaerobic induction;
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0

#ID = S000437
#Short = ARELIKEGHPGDFR2
#W = 17
#Organisms = Gerbera hybrida (Astraceae),Zea mays (maize)
#Description = Sequence highly similar to ARE (anthocyanin regulatory element) found in maize anthocyanin promoter (Tuerck and Fromm 1994; Lesnick and Chandler 1998); Binding site of R2R3-type MYB factor, GMYB 10 of G. hybrida;
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000270
#Short = ARFAT
#W = 6
#Organisms = Arabidopsis thaliana,Soybean (Glycine max),Oryza sativa (rice)
#Description = ARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana (A.t.); AuxRE; See S000337; Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean (G.m.) SAUR (Small Auxin-Up RNA) 15A gene promoter; See S000359, S000360; Found in D1 or D4 element in Soybean (G.m.) GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL (Goda et al., 2004);
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0

#ID = S000454
#Short = ARR1AT
#W = 5
#Organisms = Arabidopsis thaliana
#Description = "ARR1-binding element" found in Arabidopsis; ARR1 is a response regulator; N=G/A/C/T; AGATT is found in the promoter of rice non-symbiotic haemoglobin-2 (NSHB) gene (Ross et al., 2004);
0.25	0.25	0.25	0.25
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0

#ID = S000023
#Short = AS1CAMV
#W = 29
#Organisms = Cauliflower mosaic virus,CaMV
#Description = "as-1 (activation sequence 1)" in CaMV 35S promoter; from -85 to -58 (subdomain AI); Binding with ASF-1 (activation sequence factor 1) from pea and tobacco; Expression in root and leaf;
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000260
#Short = AS1LIKECSHPRA
#W = 15
#Organisms = cucumber (Cucumis sativus)
#Description = as-1-like motif found in cucumber (C.s.) hydroxypyruvate reductase (hprA) gene; Required for cytokinin responsiveness; Also see S000261 (CYTOSITECSHPRA);
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0

#ID = S000073
#Short = ASF1ATNOS
#W = 21
#Organisms = Agrobacterium tumefaciens
#Description = Tobacco ASF-1 binding site in nopaline synthase (NOS) promoter of Ti-plasmid of Agrobacterium tumefaciens (A.t.); From -131 to -111; See S000312; Containing two hexamer motifs; Essential for the nos promoter activity;
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0

#ID = S000024
#Short = ASF1MOTIFCAMV
#W = 5
#Organisms = CaMV,Cauliflower mosaic virus,plant,tobacco (Nicotiana tabacum),Arabidopsis thaliana
#Description = "ASF-1 binding site" in CaMV 35S promoter; ASF-1 binds to two TGACG motifs; See S000023 (AS1); Found in HBP-1 binding site of wheat histone H3 gene; TGACG motifs are found in many promoters and are involved in transcriptional activation of several genes by auxin and/or salicylic acid; May be relevant to light regulation; Binding site of tobacco TGA1a; TGA1a and b show homology to CREB; TGA6 is a new member of the TGA family; Abiotic and biotic stress differentially stimulate "as-1 element" activity;
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0

#ID = S000240
#Short = ASF1NTPARA
#W = 18
#Organisms = tobacco (Nicotiana tabacum)
#Description = "ASF-1 (as-1 binding nuclear factor)" binding site found in tobacco (N.t.) parA gene; Found in auxin-responsive regions; as-1-like sequences in parA, parB and parC bind with ASF-1, ALF-2, and ALF-1, respectively; See S000190 (ABFOS), S000238  (ALF1NTPARC), S000239 (ALF2NTPARB);
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000025
#Short = AT1BOX
#W = 12
#Organisms = pea (Pisum sativum),tobacco (Nicotiana plumbaginifolia),tomato (Lycopersicon esculentum)
#Description = "AT-1 box (AT-rich element)" found in the promoter region of the genes for tobacco ( N.p.) chlorophyll a/b binding protein (cab) and small subunit of ribulose-1,5-bisphosphate carboxylase (rbcS); Deletion of a region containing the AT-1 site in the tomato RBCS3A gene strongly inhibited reporter gene expression, whereas AT-1 site in N. plumbaginifolia CAB gene (cab-E) is in a negative element (Terzaghi & Cashmore, 1995);
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0

#ID = S000317
#Short = ATHB1ATCONSENSUS
#W = 9
#Organisms = Arabidopsis thaliana
#Description = Recognition sequence of Arabidopsis Athb-1 protein; Athb-1 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); HD-Zip domain binds to DNA as a dimer; See S000318; W=A/T;
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.5	0.0	0.0	0.5
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0

#ID = S000318
#Short = ATHB2ATCONSENSUS
#W = 9
#Organisms = Arabidopsis thaliana
#Description = Recognition sequence of Arabidopsis Athb-2 protein; Athb-2 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); See S000317; S=C/G;
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.5	0.5	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0

#ID = S000371
#Short = ATHB5ATCORE
#W = 9
#Organisms = Arabidopsis thaliana
#Description = Consensus binding sequence for Arabidopsis (A.T.) class I HDzip (Homeodomein-leucine zipper) protein, ATHB5; ATHB5 protein forms dimers in solution; ATHB5 and ATHB6 exhibit identical DNA binding specificities; ATHB5 forms heterodimers with other class I HDzip proteins; See also S000475;
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.25	0.25	0.25	0.25
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0

#ID = S000399
#Short = ATHB6COREAT
#W = 9
#Organisms = Arabidopsis thaliana
#Description = Consensus binding sequence for Arabidopsis (A.T.) homeodomain-leucine zipper protein, ATHB6; ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses; See S000371;
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0

#ID = S000248
#Short = ATRICHPSPETE
#W = 31
#Organisms = pea (Pisum sativum)
#Description = A/T-rich sequences found in pea (P.s.) plastocyanin gene (petE) promoter; Act as quantitative enhancer; Found at -289 to -255 of pea PetE gene;
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0

#ID = S000026
#Short = AUXREPSIAA4
#W = 8
#Organisms = pea (Pisum sativum)
#Description = "AuxRE (Auxine responsive element )" of pea (P.s.) PS-IAA4/5 gene; Indoleacetic acid-inducible genes; domain A; TGA1a is preferentially expressed in root tip meristems; TGA1a may contribute to the expression of GST isoenzymes, especially in root tip meristems;
0.0	0.0	0.5	0.5
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000234
#Short = AUXRETGA1GMGH3
#W = 8
#Organisms = soybean (Glycine max)
#Description = "TGA-box #1" in putative auxin-resonsive element (AUXRE) of soybean (G.m.) GH3 promoter; Strong binding site for proteins in plant nuclear extracts;
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000235
#Short = AUXRETGA2GMGH3
#W = 9
#Organisms = soybean (Glycine max)
#Description = "TGA-box #2" in putative auxin-resonsive element (AUXRE) E1 of soybean (G.m.) GH3 promoter; Strong binding site for proteins in plant nuclear extracts; Hex-like element; E1 element=-249 to -203; E2 element=-241 to -224; Called G-box by Liu et al. (1997);
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0

#ID = S000325
#Short = B2GMAUX28
#W = 10
#Organisms = soybean (Glycine max)
#Description = "B2"; DNase I protected sequence found in the soybean (G.m.) auxin responsive gene, Aux28, promoter; Located between -310 and -301; Contains a TGACGACA sequence which is similar to TGACGT/C sequence found in Ocs, CaMV35S and histone H3 promoter; Contains as-1 motif;
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000398
#Short = BBOXSITE1STPAT
#W = 10
#Organisms = Solanum tuberosum (potato)
#Description = "10 base pair motif (site 1)" within the B-box found in the potato patatin gene promoter; Involved in potato tuber-specific and sucrose-inducible gene expression; Storekeeper (STK) binds to this region and regulates patatin expression in potato;
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000498
#Short = BIHD1OS
#W = 5
#Organisms = Oryza sativa (rice)
#Description = Binding site of OsBIHD1, a rice BELL homeodomain transcription factor;
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000222
#Short = BOX1PSGS2
#W = 11
#Organisms = pea (Pisum sativum)
#Description = Box 1 element in pea (P.s.) glutamine synthetase (GS2) gene; An element in a 33-bp AT-rich sequence (box 1) of the 5' end of a GS2 promoter; Located at -837 to -827 of pea GS2; Multimer of box 1 element was used to isolate a cDNA encoding an AT-rich DNA binding protein (ATBP-1) (Tjaden & Coruzzi, 1994);
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000208
#Short = BOX1PVCHS15
#W = 14
#Organisms = bean (Phaseolus vulgaris)
#Description = Box 1 of bean (P.v.) chs15 promoter; one of SBF-1 binding sites in chs15 promoter; Located at -318 to -305; Involved in organ-specific expression in plant development; Functions as a transcriptional silencer in electroporated protoplasts derived from undifferentiated suspension-cultured soybean cells; Resemble the binding site for the GT-1 factor in light-responsive elements; For a compilation of related GT elements and factors, see Villain et al. (1996);
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000204
#Short = BOX2PSGS2
#W = 11
#Organisms = pea (Pisum sativum)
#Description = Box 2 in glutamine synthetase (GS2) gene in pea (P.s.); Repeated in tandem with a partial palindrome located between the repeats; Located at ca. -300 of pea GS2;
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0

#ID = S000209
#Short = BOX2PVCHS15
#W = 14
#Organisms = bean (Phaseolus vulgaris)
#Description = Box 2 of bean (P.v.) chs15 promoter; SBF-1 binding site; For a compilation of related GT elements and factors, see Villain et al. (1996);
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000210
#Short = BOX3PVCHS15
#W = 14
#Organisms = bean (Phaseolus vulgaris)
#Description = Box 3 of bean (P.v.) chs15 promoter; SBF-1 binding site; For a compilation of related GT elements and factors, see Villain et al. (1996);
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000225
#Short = BOXBPSAS1
#W = 14
#Organisms = pea (Pisum sativum)
#Description = Box B in pea (P.s.) asparagine synthetase (AS1) gene; Found at -61; AS1 is negatively regulated by light; Box B binds with nuclear proteins;
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0

#ID = S000227
#Short = BOXC'PSAS1
#W = 18
#Organisms = pea (Pisum sativum)
#Description = Box C' in pea asparagine synthetase (AS1) gene; Found at -88; AS1 is negatively regulated by light; Box C' binds with nuclear proteins, which was competed by a putative repressor element RE1 (see S000195);
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0

#ID = S000226
#Short = BOXCPSAS1
#W = 7
#Organisms = pea (Pisum sativum)
#Description = Box C in pea (P.s.) asparagine synthetase (AS1) gene; Found at -45; AS1 is negatively regulated by light; Box C binds with nuclear proteins, which was competed by a putative repressor element RE1 (see S000195);
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000228
#Short = BOXICHS
#W = 16
#Organisms = parsley (Petroselinum crispum),mustard (Sinapis alba)
#Description = "Box I consensus sequence in the promoters of mustard and parsley chs genes; Essential for light regulation (Terzaghi & Cashmore, 1995); M=A/C;
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.5	0.5	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.5	0.5	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.5	0.5	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000296
#Short = BOXIINTPATPB
#W = 6
#Organisms = tobacco (Nicotiana tabacum)
#Description = "Box II" found in the tobacco (N.t.) plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoter; See S000295;
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000229
#Short = BOXIIPCCHS
#W = 7
#Organisms = parsley (Petroselinum crispum)
#Description = Core of "Box II/G box" found in the parsley (P.c.) chs genes; Essential for light regulation (Terzaghi & Cashmore, 1995); See S000345;
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0

#ID = S000295
#Short = BOXINTPATPB
#W = 21
#Organisms = tobacco (Nicotiana tabacum)
#Description = "Box I" found in the tobacco (N.t.) plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoter; See S000296;
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0

#ID = S000492
#Short = BOXLCOREDCPAL
#W = 7
#Organisms = Daucus carota (carrot)
#Description = Consensus of the putative "core" sequences of box-L-like sequences in carrot (D.c.) PAL1 promoter region; DCMYB1 bound to these sequences in vitro; See also S000136 (Box P), S000137 (Box A), S000138 (Box L); W=A/T;
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.5	0.0	0.0	0.5
0.5	0.0	0.0	0.5
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000436
#Short = BP5OSWX
#W = 7
#Organisms = Oryza sativa (rice)
#Description = OsBP-5 (a MYC protein) binding site in Wx promoter;
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0

#ID = S000352
#Short = BS1EGCCR
#W = 6
#Organisms = Eucalyptus gunnii
#Description = "BS1 (binding site 1)" found in E. gunnii Cinnamoyl-CoA reductase (CCR) gene promoter; nuclear protein binding site; Required for vascular expression;
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0

#ID = S000326
#Short = C1GMAUX28
#W = 16
#Organisms = soybean (Glycine max)
#Description = "C1"; DNase I protected sequence found in the soybean (G.m.) auxin responsive gene, Aux28, promoter; Located between -463 and -448; A/T-rich sequence;
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0

#ID = S000237
#Short = C1MOTIFZMBZ2
#W = 11
#Organisms = maize (Zea mays)
#Description = "C1-motif"; Similar to Myb-box; Found in the promoter region of maize (Z.m.) Bronze2 ( glutathione S-transferase) gene; C1 binding; C1-motif and R-motif were shown to be important for full R and C1 activation of the Bz2 promoter; S=C or G;
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.5	0.5	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0

#ID = S000327
#Short = C2GMAUX28
#W = 20
#Organisms = soybean (Glycine max)
#Description = "C2"; DNase I protected sequence found in the soybean (G.m.) auxin responsive gene, Aux28, promoter; Located between -552 and -553; Contains (ATT)4 sequence;
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0

#ID = S000028
#Short = CAATBOX1
#W = 4
#Organisms = pea (Pisum sativum)
#Description = "CAAT promoter consensus sequence" found in legA gene of pea;
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000029
#Short = CAATBOX2
#W = 9
#Organisms = eukaryote
#Description = "CAAT box" found in the 5' upstream region (-80) of many eukaryotic genes; GGC(or T)CAATCT;
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000368
#Short = CACGCAATGMGH3
#W = 8
#Organisms = Soybean (Glycine max)
#Description = Sequence found in D4 element in Soybean (G.m.) GH3 gene promoter; Showed constitutive activity with TGTCTC element (See S000270); Confers auxin inducibility; Binding site of nuclear protein; See also S000369;
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000042
#Short = CACGTGMOTIF
#W = 6
#Organisms = tomato (Lycopersicon esculentum),Arabidopsis thaliana,snapdragon (Antirrhinum majus),wheat (Triticum aestivum),parsley: maize (Zea mays),periwinkle (Catharanthus roseus),Brassica napus,bean (Phaseolus vulgaris)
#Description = "CACGTG motif"; "G-box"; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; See S000345; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); A prominent hit by in silico analysis in both induced and repressed phyA-responsive promoters (Hudson and Quail 2003); Review by Terzaghi WB, Cashmore AR. "Light-regulated transcription" in Annu Rev Plant Physiol Plant Mol Biol 46:445-474 (1995);
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0

#ID = S000449
#Short = CACTFTPPCA1
#W = 4
#Organisms = Flaveria trinervia
#Description = Tetranucleotide (CACT) is a key component of Mem1 (mesophyll expression module 1) found in the cis-regulatory element in the distal region of the phosphoenolpyruvate carboxylase (ppcA1) of the C4 dicot F. trinervia; Y=T/C;
0.0	0.5	0.0	0.5
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000148
#Short = CANBNNAPA
#W = 7
#Organisms = Brassica napus
#Description = Core of "(CA)n element" in storage protein genes in Brasica napus (B.n.); embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressor;
0.0	1.0	0.0	0.0
0.25	0.25	0.25	0.25
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000421
#Short = CAREOSREP1
#W = 6
#Organisms = Oryza sativa (rice)
#Description = "CAREs (CAACTC regulatory elements)" found in the promoter region of a cystein proteinase (REP-1) gene in rice;
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0

#ID = S000347
#Short = CARG1ATAP3
#W = 18
#Organisms = Arabidopsis thaliana
#Description = "CArG1" found in the Arabidopsis (A.t.) APETALA3 (AP3) gene promoter; Binding site of AP3/PI heterodimer; Binding site of AP3/PI heterodimer; Binding site for a positively acting factors; MADS domain transcription factors bind with a consensus sequence called the CArG box; See S000348, S000349;
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000348
#Short = CARG2ATAP3
#W = 18
#Organisms = Arabidopsis thaliana
#Description = "CArG2" found in the Arabidopsis (A.t.) APETALA3 (AP3) gene promoter; Mutations in CArG2 result in a decrease in the expression in petals, but the expression pattern in stamens is unchanged; See S000348, S000349;
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0

#ID = S000349
#Short = CARG3ATAP3
#W = 18
#Organisms = Arabidopsis thaliana
#Description = "CArG3" found in the Arabidopsis (A.t.) APETALA3 (AP3) gene promoter; Binding site of AP3/PI heterodimer; Binding site for a negatively acting factors; Binding sequence of Arabidopsis (A.t.) MADS domain homeotic proteins APETALA1, APETALA3, PISTILLATA, and AGAMOUS; AP1, AG, and AP3-PI complexes induce similar conformational changes on a CArG-box sequence; See S000347, S000348, S000338;
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000404
#Short = CARGATCONSENSUS
#W = 10
#Organisms = Arabidopsis thaliana
#Description = "CArG consensus" sequence found in the promoter of Arabidopsis (A.t.) SOC1 which is the MADS-box flowering-time gene; FLC is a component of the vernalization (low-temperature) pathway binds directly to this site and blocks transcriptional activation of SOC1 by CONSTANS (CO); See also S000342 (AGAMOUSATCONSENSUS); W=A/T;
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.5	0.0	0.0	0.5
0.5	0.0	0.0	0.5
0.5	0.0	0.0	0.5
0.5	0.0	0.0	0.5
0.5	0.0	0.0	0.5
0.5	0.0	0.0	0.5
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0

#ID = S000431
#Short = CARGCW8GAT
#W = 10
#Organisms = Arabidopsis thaliana
#Description = A variant of CArG motif (see S000404), with a longer A/T-rich core; Binding site for AGL15 (AGAMOUS-like 15); W=A/T;
0.0	1.0	0.0	0.0
0.5	0.0	0.0	0.5
0.5	0.0	0.0	0.5
0.5	0.0	0.0	0.5
0.5	0.0	0.0	0.5
0.5	0.0	0.0	0.5
0.5	0.0	0.0	0.5
0.5	0.0	0.0	0.5
0.5	0.0	0.0	0.5
0.0	0.0	1.0	0.0

#ID = S000446
#Short = CARGNCAT
#W = 12
#Organisms = Arabidopsis thaliana
#Description = Noncanonical CArG motif (CC-Wx8-GG) found in the promoter region of DTA1 (AtGA2ox6); A relevant cis element for the response to AGL15 (AGAMOUS-like 15) in vivo; W=A/T; See S000431 (C-Wx8-G), S000404 (CArG consensus; CC-Wx6-GG);
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.5	0.0	0.0	0.5
0.5	0.0	0.0	0.5
0.5	0.0	0.0	0.5
0.5	0.0	0.0	0.5
0.5	0.0	0.0	0.5
0.5	0.0	0.0	0.5
0.5	0.0	0.0	0.5
0.5	0.0	0.0	0.5
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0

#ID = S000370
#Short = CATATGGMSAUR
#W = 6
#Organisms = soybean (Glycine max)
#Description = Sequence found in NDE element in soybean (G.m.) SAUR (Small Auxin-Up RNA) 15A gene promoter; Involved in auxin responsiveness; See S000359, S000360;
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0

#ID = S000497
#Short = CBFHV
#W = 6
#Organisms = Hordeum vulgare (barley)
#Description = Binding site of barley (H.v.) CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs); See also S000411 (SQ=GTCGAC); R=A/G; Y=C/T;
0.5	0.0	0.5	0.0
0.0	0.5	0.0	0.5
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000149
#Short = CCA1ATLHCB1
#W = 8
#Organisms = Arabidopsis thaliana
#Description = CCA1 binding site; CCA1 protein (myb-related transcription factor) interact with two imperfect repeats of AAMAATCT in Lhcb1*3 gene of Arabidopsis thaliana (A.t.); Related to regulation by phytochrome;
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.5	0.5	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000030
#Short = CCAATBOX1
#W = 5
#Organisms = eukaryotes,Glysine max (Soybean)
#Description = Common sequence found in the 5'-non-coding regions of eukaryotic genes; "CCAAT box" found in the promoter of heat shock protein genes; Located immediately upstream from the most distal HSE of the promoter; "CCAAT box" act cooperatively with HSEs to increase the hs promoter activity;
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000369
#Short = CCTCGTGTCTCGMGH3
#W = 11
#Organisms = Soybean (Glycine max)
#Description = Sequence found in D1 element in Soybean (G.m.) GH3 gene promoter; Showed constitutive activity with TGTCTC element (See S000270); Confers auxin inducibility; Binding site of nuclear protein; See also S000368;
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0

#ID = S000440
#Short = CDA1ATCAB2
#W = 8
#Organisms = Arabidopsis thaliana
#Description = CDA-1 (CAB2 DET1-associated factor 1) binding site in DtRE (dark response element) f of chlorophyll a/b-binding protein2 (CAB2) gene in Arabidopsis;
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0

#ID = S000282
#Short = CE3OSOSEM
#W = 10
#Organisms = rice (Oryza sativa)
#Description = "CE3 (Coupling Element 3)" found in the promoter of the rice (O.s.) Osem gene; Required for ABA-responsiveness and VP1 activation; Binding site of TRAB1; Motif A and CE3 (S000281) are functionally equivalent; TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption;
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0

#ID = S000031
#Short = CELLCYCLESC
#W = 8
#Organisms = yeast (Saccharomyces cerevisiae)
#Description = "cell cycle box" found in URS2 (-940/-200) of HO gene of S.cerevisiae; cell-cycle-specific activation of transcription;
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000032
#Short = CEREGLUBOX1PSLEGA
#W = 9
#Organisms = pea (Pisum sativum)
#Description = "cereal glutenin box" in pea legumin gene (legA); sequence homologous to the cereal glutenin gene control element ("-300 element");
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0

#ID = S000033
#Short = CEREGLUBOX2PSLEGA
#W = 8
#Organisms = pea (Pisum sativum)
#Description = "cereal glutenin box" in pea legumin gene (legA); sequence homologous to the cereal glutenin gene control element ("-300 element");
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000034
#Short = CEREGLUBOX3PSLEGA
#W = 9
#Organisms = pea (Pisum sativum)
#Description = "cereal glutenin box" in pea (P.s.) legumin gene (legA); sequence homologous to the cereal glutenin gene control elements;
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0

#ID = S000205
#Short = CGACGOSAMY3
#W = 5
#Organisms = rice (Oryza sativa)
#Description = "CGACG element" found in the GC-rich regions of the rice (O.s.) Amy3D and Amy3E amylase genes, but not in Amy3E gene; May function as a coupling element for the G box element;
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0

#ID = S000501
#Short = CGCGBOXAT
#W = 6
#Organisms = Arabidopsis thaliana
#Description = "CGCG box" recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca++/calmodulin binds to all AtSRs; V=A/C/G; B=G/T/C;
0.3333333333333333	0.3333333333333333	0.3333333333333333	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.3333333333333333	0.3333333333333333	0.3333333333333333

#ID = S000213
#Short = CGF1ATCAB2
#W = 33
#Organisms = Arabidopsis thaliana
#Description = CGF-1 binding site in the Arabidopsis (A.t.) cab2 gene promoter; CGF-1=CAB GATA Factor 1; Found at -74 to -42; Contains a highly conserved, repeated GATA motif termed I-box (see S000124, S000199); For GATA motif, see S000039; The binding specificity of CGF-1 appears to be related to GT-family of DNA-binding proteins; For a compilation of related GT elements and factors, see Villain et al. (1996);
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000294
#Short = CGTGTSPHZMC1
#W = 16
#Organisms = maize (Zea mays)
#Description = Sequence found in the maize (Z.m.) C1 gene promoter; Located between -147 to -132; Containing Sph element; Required for ABA responsiveness; See S000154, S000293;
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000252
#Short = CIACADIANLELHC
#W = 10
#Organisms = tomato (Lycopersicon esculentum)
#Description = Region necessary for circadian expression of tomato (L.e.) Lhc gene;
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0

#ID = S000511
#Short = CMSRE1IBSPOA
#W = 7
#Organisms = Ipomoea batatas (sweet potato)
#Description = CMSRE-1 (Carbohydrate Metabolite Signal Responsive Element 1) found in the promoter of sweet potato (I.b.) sporamin A gene;
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0

#ID = S000301
#Short = CONSERVED11NTZMATP1
#W = 11
#Organisms = maize (Zea mays)
#Description = Conserved 11 nt sequence found in the maize (Z.m.) mitochondrial atp1 promoter; Located between -5 and +6; Essential for the expression;
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000469
#Short = COREOS
#W = 28
#Organisms = Oryza sativa (rice)
#Description = CORE (coordinate regulatory element for antioxidant defense) conserved on the promoter regions of three antioxidant defense genes in rice: cytosolic superoxide dismutase, cytosolic thioredoxin, and glutaredoxin; K=T/G; W=T/A; Y=T/C; R=A/G; M=C/A;
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.5	0.5
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.5	0.0	0.0	0.5
0.0	0.5	0.0	0.5
0.5	0.0	0.5	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.5	0.0	0.0	0.5
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.5	0.5	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.5	0.0	0.0	0.5
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0

#ID = S000491
#Short = CPBCSPOR
#W = 6
#Organisms = Cucumis sativus L. (cucumber)
#Description = The sequence critical for Cytokinin-enhanced Protein Binding in vitro, found in -490 to -340 of the promoter of the cucumber (CS) POR (NADPH-protochlorophyllide reductase) gene;
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0

#ID = S000313
#Short = CPRFPCCHS
#W = 10
#Organisms = Parsley (Petroselinum crispum)
#Description = "BoxII"; Binding site of CPRF-1, -2, -3 and -4(Common Plant Regulatory Factor) in the parsley (P.c.) light responsive chalcone synthase (CHS) gene promoter; CPRF proteins are bZIP class transcription factors; CPRF proteins participates in the light-mediated activation of the CHS gene in parsley; "ACE"; The proline-rich domains of CPRF1 and 4 activate transcription; CPRF1-containing bZIP heterodimer interacts with ACE in vivo;
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000411
#Short = CRTDREHVCBF2
#W = 6
#Organisms = Hordeum vulgare (barley)
#Description = Preferred sequence for AP2 transcriptional activator HvCBF2 of barley; "Core CRT/DRE motif"; HvCBF2 bound to a (G/a)(T/c)CGAC core motif (Xue, 2003); DNA binding is regulated by temperature; This motif was erroneously ID-labeled in PLACEdb as CDTDREHVCBF2, and was corrected on 22 June, 2006;
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000460
#Short = CTRMCAMV35S
#W = 9
#Organisms = Cauliflower mosaic virus (CaMV)
#Description = CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA; See also S000405, S000427 (GAGA); (TC)4T;
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000493
#Short = CURECORECR
#W = 4
#Organisms = Chlamydomonas reinhardtii
#Description = GTAC is the core of a CuRE (copper-response element) found in Cyc6 and Cpx1 genes in Chlamydomonas; Also involved in oxygen-response of these genes; For CuRE, see Quin and Merchant, 1995;
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000261
#Short = CYTOSITECSHPRA
#W = 13
#Organisms = cucumber (Cucumis sativus)
#Description = 13 bp sequence of unknown function found in cucumber (C.s.) hydroxypyruvate reductase (hprA) gene promoter; Protein binding site; Required for cytokinin responsiveness; See S000260 (AS1LIKECSHPRA) found in the same region; Also involved in light responsiveness; see also S000260;
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0

#ID = S000328
#Short = D1GMAUX28
#W = 10
#Organisms = soybean (Glycine max)
#Description = "D1"; DNase I protected sequence found in the soybean (G.m.) auxin responsive gene, Aux28, promoter; D1 and D4 share a very similar core sequence TAGTXXCTGT and TAGTXCTGT, respectively; D1/D4-like sequence were identified in several other auxin-responsive genes; Binding site of GmGT-2 which is the GT-2 family of transcription factors; GmGT-2 are down-regulated by light in a phytochrome-dependent manner; See 000331;
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0

#ID = S000329
#Short = D2GMAUX28
#W = 12
#Organisms = soybean (Glycine max)
#Description = "D2"; DNase I protected sequence found in the soybean (G.m.) auxin responsive gene, Aux28, promoter; Located between -703 and -716; A/T-rich sequence;
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000330
#Short = D3GMAUX28
#W = 11
#Organisms = soybean (Glycine max)
#Description = "D3"; DNase I protected sequence found in the soybean (G.m.) auxin responsive gene, Aux28, promoter; Located between -750 and -760; A/T-rich sequence;
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000331
#Short = D4GMAUX28
#W = 9
#Organisms = soybean (Glycine max)
#Description = "D4"; DNase I protected sequence found in the soybean (G.m.) auxin responsive gene, Aux28, promoter; D1 and D4 share a very similar core sequence TAGTXXCTGT and TAGTXCTGT, respectively; D1/D4-like sequence were identified in several other auxin-responsive genes; See 000328;
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0

#ID = S000379
#Short = DE1PSPRA2
#W = 12
#Organisms = pea (Pisum sativum)
#Description = "DE1" found in the pea(P.S) pra2 gene promoter; Involved in pra2 down-regulation by phytochrome A, phytochrome B and blue-light photoreceptors; pra2 encodes a small GTPase belonging to the YPT/rab family; DF1 has DNA-binding domain specifically binds to two types of DNA sequences, DE1 and GT2;
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0

#ID = S000265
#Short = DOFCOREZM
#W = 4
#Organisms = maize (Zea mays)
#Description = Core site required for binding of Dof proteins in maize (Z.m.); Dof proteins are DNA binding proteins, with presumably only one zinc finger, and are unique to plants; Four cDNAs encoding Dof proteins, Dof1, Dof2, Dof3 and PBF, have been isolated from maize; PBF is an endosperm specific Dof protein that binds to prolamin box; Maize Dof1 enhances transcription from the promoters of both cytosolic orthophosphate kinase (CyPPDK) and a non-photosynthetic PEPC gene; Maize Dof2 supressed the C4PEPC promoter;
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0

#ID = S000292
#Short = DPBFCOREDCDC3
#W = 7
#Organisms = carrot (Daucus carota),Arabidopsis thaliana
#Description = A novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot (D.c.) Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5;
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.0	0.0	1.0	0.0

#ID = S000337
#Short = DR5GMGH3
#W = 11
#Organisms = Soybean (Glycine max)
#Description = "DR5"; A highly active synthetic auxin response element; Created by site-directed mutations in a natural composite AuxRE found in the soybean GH3 promoter; The DR5 showed greater auxin responsiveness; Binding site of ARF1; See S000270;
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0

#ID = S000401
#Short = DRE1COREZMRAB17
#W = 7
#Organisms = maize (Zea mays)
#Description = "DRE1" core found in maize (Z.M.) rab17 gene promoter; "DRE1" was protected, in in vivo footprinting, by a protein in embryos specifically, but in leaves, was protected when was treated with ABA and drought; rab17 is expressed during late embryogenesis, and is induced by ABA;  See S000150, S000200 and S000402;
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0

#ID = S000402
#Short = DRE2COREZMRAB17
#W = 6
#Organisms = maize (Zea mays)
#Description = "DRE2" core found in maize (Z.M.) rab17 gene promoter; "DBF1" and "DBF2" bound to "DRE2"; rab17 is expressed during late embryogenesis, and is induced by ABA; See S000150, S000200 and S000401;
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000418
#Short = DRECRTCOREAT
#W = 6
#Organisms = Oryza sativa (rice),Zea mays (maize),Helianthus annuus (sunflower)
#Description = Core motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; R=G/A; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; See S000402 (ACCGAC); Maize ZmDREB1A bound to DRE (Qin et al. 2004); HaDREB2 in Helianthus annuus (sunflower)(Diaz-Martin et al. 2005); HaDREB2 physically interact with HaHSFA9 in vitro (Diaz-Martin et al. 2005);
0.5	0.0	0.5	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000152
#Short = DREDR1ATRD29AB
#W = 9
#Organisms = Arabidopsis thaliana,Populus spp.
#Description = Related to responsiveness to drought, low-temperature or high-salt stress; See S000153, S000157; Binding site of DREB1 and DREB2: Binding site of Arabidopsis CBF1(C-repeat/DRE binding factor); Overexpression of DREB1A activated the expression of stress tolerance genes; CBF1 overexpression induces COR genes and enhances freezing tolerance;  Heterologous CBF1 expression enhances oxidative stresses tolerance; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis;
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000396
#Short = E2F1OSPCNA
#W = 8
#Organisms = rice (Oryza sativa),tobacco (Nicotiana tabacum)
#Description = "re2f-1" found in the promoter of rice PCNA gene; Located between -142 and -135; "te2f-1" found in the promote of Tobacco PCBA gene; Located between -122 and -115;  Binding site of OsE2F1 and OsE2F2; Involved in transcriptional activation in actively dividing cells and tissue;
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000366
#Short = E2FANTRNR
#W = 8
#Organisms = tobacco (Nicotiana tabacum),Arabidopsis thaliana
#Description = "E2Fa element" found in the tobacco (N.t.) RNR (Ribonucleotide reductase) gene promoter and  in the Arabidopsis thaliana (A.t.) CDC6 gene promoter; Binding site of tobacco and Arabidopsis E2F; Involved in upregulation of the promoter at G1/S transition; See S000367;
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0

#ID = S000417
#Short = E2FAT
#W = 9
#Organisms = Arabidopsis thaliana
#Description = "E2F-binding site" found in many potential E2F target genes; most potential E2F targets identified in silico show a cell cycle-regulated expression; Y=T/C; see S000366;
0.0	0.0	0.0	1.0
0.0	0.5	0.0	0.5
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000367
#Short = E2FBNTRNR
#W = 8
#Organisms = tobacco (Nicotiana tabacum)
#Description = "E2Fb" found in the tobacco (N.t.) RNR (Ribonucleotide reductase) gene promoter; Binding site of tobacco E2F; Involved in upregulation of the promoter at G1/S transition; See S000366; "dE2F (distal reverse E2F element)" important for regulating specific RNR1a gene expression in respsonse to UV-C irradiation; See S000455;
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000476
#Short = E2FCONSENSUS
#W = 8
#Organisms = Arabidopsis thaliana,Nicotiana tabacum (tobacco),Oryza sativa (rice),Nicotiana benthamiana
#Description = "E2F consensus sequence" of all different E2F-DP-binding motifs that were experimentally verified in plants (Vandepoele et al., 2005); See also S000417, S000397, S000396, S000367, S000366; W=A/T; S=C/G;
0.5	0.0	0.0	0.5
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.5	0.5	0.0
0.0	0.5	0.5	0.0
0.0	1.0	0.0	0.0
0.0	0.5	0.5	0.0
0.0	0.5	0.5	0.0

#ID = S000144
#Short = EBOXBNNAPA
#W = 6
#Organisms = Brassica napus
#Description = E-box of napA storage-protein gene of Brassica napus (B.n.); See S000042 (CACGTGMOTIF); see S000407 (Myc consensus: CANNTG); This sequence is also known as RRE (R response element)(Hartmann et al., 2005);
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0

#ID = S000494
#Short = EECCRCAH1
#W = 7
#Organisms = Chlamydomonas reinhardtii
#Description = "EEC"; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1 (see Yoshioka et al, 2004); N=A/G/C/T;
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.25	0.25	0.25	0.25
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.25	0.25	0.25	0.25
0.0	1.0	0.0	0.0

#ID = S000332
#Short = EIN3ATERF1
#W = 28
#Organisms = Arabidopsis thaliana
#Description = EIN3 (Ethylene-insensitive 3) binding site found in the promoter of the Arabidopsis (A.t.) ERF1 (Ethylene-Response-Factor 1); EIN3 recognizes its target as a homodimer; EIN3 is necessary and sufficient for ERF1 expression; Consititutive expression of ERF1 results in the activation of a variety of ethylene response genes and phenotype; ERF1 is a GCC-box binding site; ERF1 acts downstream of EIN3;
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000319
#Short = ELEMENT1GMLBC3
#W = 24
#Organisms = Soybean (Glycine max)
#Description = "Element 1" found in the promoter of soybean (G.m.) leghaemoglobin lbc3 gene; Binding site of nuclear extract from soybean nodules; Located at -223 to -246; Element 1 and Element 2 (S000320) bind to the same nodule specific factor; Element 1 and Element 2 share a common motif; See S000320;
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0

#ID = S000320
#Short = ELEMENT2GMLBC3
#W = 16
#Organisms = Soybean (Glycine max)
#Description = "Element 2" found in the promoter of soybean (G.m.) leghaemoglobin lbc3 gene; Binding site of nuclear extract from soybean nodules; Located at -161 to -176; Element 1(S000319) and Element 2 (S000320) bind to the same nodule specific factor; Element  2 is highly conserved in other soybean lb gene promoter regions; See S000319;
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0

#ID = S000306
#Short = ELRE1PCPAL1
#W = 17
#Organisms = parsley (Petroselinum crispum)
#Description = One of two elicitor (ELRE) and light response elements (LRE) found in the parsley (P.c.) phenylalanine ammonia-lyase (PAL-1) gene promoter; Involved in UV light and elicitor responsiveness; Conserved in several elicitor or light-responsive genes; See S000307;
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0

#ID = S000307
#Short = ELRE2PCPAL1
#W = 14
#Organisms = parsley (Petroselinum crispum)
#Description = One of two elicitor (ELRE) and light response elements (LRE) found in the parsley (P.c.) phenylalanine ammonia-lyase (PAL-1) gene promoter; Involved in UV light and elicitor responsiveness; Conserved in several elicitor or light-responsive genes; See S000306;
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000142
#Short = ELRECOREPCRP1
#W = 6
#Organisms = Petroselinum crispum (parsley),Nicotiana tabacum (tobacco)
#Description = ElRE (Elicitor Responsive Element) core of parsley (P.c.) PR1 genes; consensus sequence of elements W1 and W2 of parsley PR1-1 and PR1-2 promoters; Box W1 and W2 are the binding site of WRKY1 and WRKY2, respectively; ERE; "WA box"; One of the W boxes found in the Parsley (P.c.) WRKY1 gene promoter; Required for elicitor responsiveness; See S000310; "WC box" WB box (S000310) and WC box constitute a palindrome; WRKY1 protein binding site; W-box found in thioredoxin h5 gene in Arabidopsis (Laloi et al.);
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000155
#Short = ELRENTCHN50
#W = 12
#Organisms = tobacco (Nicotiana tabacum)
#Description = Elicitor-responsive element (ElRE); Found in tobacco (N. t.) basic class I chitinase gene (CHN50);
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0

#ID = S000119
#Short = EMBP1TAEM
#W = 8
#Organisms = wheat (Triticum aestivum),Arabidopsis thaliana
#Description = Binding site of trans-acting factor EMBP-1; wheat (T.a.) Em gene; See S000015; Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0

#ID = S000452
#Short = EMHVCHORD
#W = 8
#Organisms = Hordeum vulgare (barley)
#Description = "Endosperm motif (EM)" found in the promoter of barley (H.v.) c-hordein gene; Involved in the nitrogen response of c-hordein promoter;
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0

#ID = S000036
#Short = EREGCC
#W = 11
#Organisms = tobacco (Nicotiana tabacum),Arabidopsis thaliana
#Description = "GCC box" in "ERE (ethylene responsive element)"; Ethylene-responsive  region of tobacco (N.t.) chitinase gene contains two copies of the GCC-box; ERF2 and ERF4 enhanced the GCC box-mediated transcription; ERF3 reduced the transcription of the reporter gene in tobacco protoplasts; Binding site of AtEBP; Pti4/5/6 proteins from tomato which belong to the ERF family activate the expression of "GCC box"-containing PR genes; ERF3 was found to interact with NtUBC2, a ubiquitin-conjugating enzyme;
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000037
#Short = ERELEE4
#W = 8
#Organisms = tomato (Lycopersicon esculentum),carnation (Dianthus caryophillus),Lycopersicon chilense
#Description = "ERE (ethylene responsive element)" of tomato (L.e.) E4 and carnation GST1 genes; GST1 is related to senescence; Found in the 5'-LTR region of TLC1.1 retrotransposon family in Lycopersicon chilense (Tapia et al.); ERE motifs mediate ethylene-induced activation of the U3 promoter region;
1.0	0.0	0.0	0.0
0.5	0.0	0.0	0.5
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000509
#Short = ESPASGL01
#W = 14
#Organisms = Avena sativa (oat)
#Description = "ESP (endosperm specificity palindrome)" element found in the promoter of oat (A.s.) globulin gene (AsGlo1);
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0

#ID = S000385
#Short = EVENINGAT
#W = 9
#Organisms = Arabidopsis thaliana,Solanum melongena
#Description = "Evening element" found 46 times in the promoters of 31 cycling genes in Arabidopsis thaliana (Harmer et al. 2000); Required for circadian control of gene expression; "EE (evening element) motif"; Also found in the promoter of the Solanum melongena gene encoding cysteine protease, and identified as cis-element for its circadian regulation (Rawat et al. 2005);
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000438
#Short = GADOWNAT
#W = 7
#Organisms = Arabidopsis thaliana
#Description = Sequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABRE (Busk and Pages 1998);
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0

#ID = S000427
#Short = GAGA8HVBKN3
#W = 16
#Organisms = Hordeum vulgare (barley)
#Description = "GA octodinucleotide repeat" found in intron IV of the barley (H.v.) gene Bkn3; Binding site for GAGA-binding factor BBR; See S000405 (GAGA element in the soy bean Gsa1 gene);
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0

#ID = S000405
#Short = GAGAGMGSA1
#W = 18
#Organisms = Glysine max (soybean)
#Description = "GAGA element" found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean (G.m.); GAGA binding protein (GBP) binds to (GA)n/(CT)n DNA;
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0

#ID = S000419
#Short = GARE1OSREP1
#W = 7
#Organisms = Oryza sativa (rice)
#Description = "Gibberellin-responsive element (GARE)" found in the promoter region of a cystein proteinase (REP-1) gene in rice; See S000020;
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0

#ID = S000165
#Short = GARE2
#W = 14
#Organisms = rice (Oryza sativa),barley (Hordeum vulgare),wheat (Triticum aestivum)
#Description = Putative gibberellin responsive element; Consensus sequence of GA inducible alpha-amylase genes from rice, barley and wheat;
0.5	0.0	0.5	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.5	0.0	0.5	0.0
1.0	0.0	0.0	0.0
0.25	0.25	0.25	0.25
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.5	0.0	0.5
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0

#ID = S000420
#Short = GARE2OSREP1
#W = 7
#Organisms = Oryza sativa (rice)
#Description = "Gibberellin-responsive element (GARE)" found in the promoter region of a cystein proteinase (REP-1) gene in rice; See S000020;
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0

#ID = S000297
#Short = GARE4HVEPB1
#W = 15
#Organisms = barley (Hordeum vulgare)
#Description = "GARE-4" found in the barley (H.v.) EPB-1 (cysteine proteinase) gene promoter; Located between -142 to -156; Required for GA induction; Putative binding site of transcription factor, GAMyB; See S000298;
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0

#ID = S000439
#Short = GAREAT
#W = 7
#Organisms = Arabidopsis thaliana
#Description = GARE (GA-responsive element); Occurrence of GARE in GA-inducible, GA-responsible, and GA-nonresponsive genes found in Arabidopsis seed germination was 20, 18, and 12%, respectively; see S000181;
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.5	0.0	0.5	0.0

#ID = S000038
#Short = GAREHVAMY1
#W = 21
#Organisms = barley (Hordeum vulgare)
#Description = "GARE (gibberellic acid responsive element)" of barley (H.v.) alpha-amylase gene (Amy 1/6-4); GA3;
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000039
#Short = GATABOX
#W = 4
#Organisms = CaMV,Cauliflower mosaic virus,Petunia hybrida (petunia),Arabidopsis thaliana,Oryza sativa (rice)
#Description = "GATA box"; GATA motif in CaMV 35S promoter; Binding with ASF-2; Three GATA box repeats were found in the promoter of Petunia (P.h.) chlorophyll a/b binding protein, Cab22 gene; Required for high level, light regulated, and tissue specific expression; Conserved in the promoter of all LHCII type I Cab genes;
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0

#ID = S000272
#Short = GBOX10NT
#W = 10
#Organisms = tobacco (Nicotiana tabacum)
#Description = One of 11 G-box sequences in tobacco (N.t.); Required for high-level constitutive expression in seed, leaf, root, axillary bud, almost all parts of flower buds and pollen;
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000041
#Short = GBOXLERBCS
#W = 9
#Organisms = tomato (Lycopersicon esculentum),Arabidopsis thaliana
#Description = "G box"; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato (L.e.) and Arabidopsis; Binding with GBF; M=A/C; See S000345;
0.5	0.5	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0

#ID = S000324
#Short = GBOXPC
#W = 10
#Organisms = parsley (Petroselinum crispum)
#Description = "G box"; Binding site of parsley (P.c.) cytosolic G-box binding factors (cytosolic GBFs); Cytosolic G-Box binding activity is modulated by light; DNA binding activity of cytosolic GBFs is regulated by cytosolic phosphorylation/dephospholylation activities; Cytosolic GBFs are translocated to the nucleus in a light-regulated manner;
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0

#ID = S000206
#Short = GBOXRELOSAMY3
#W = 11
#Organisms = rice (Oryza sativa)
#Description = G box-related element found in Amy3D (amylase) promoter of rice (O.s.); Similar to ABRE;
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000380
#Short = GBOXSORBCS1
#W = 10
#Organisms = spinach (Spinacia oleracea)
#Description = "G-box" found in the spinach(S.O.) RBCS-1 gene promoter; Located between -219 and -212; G-box trimer confers relatively high level expression in roots;
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0

#ID = S000027
#Short = GCAACREPEATZMZEIN
#W = 10
#Organisms = maize (Zea mays)
#Description = "GCAAC repeat" found in the 22bp recognition site for beta-1 factor in the promoter of beta-zein (prolamin type) gene of maize (Z.m.); GCAAC is the core recognition sequence of the protein encoded by the retroviral oncogene myb (Biedenkapp et al. Nature 335:835-837 (1988));
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000351
#Short = GCBP2ZMGAPC4
#W = 9
#Organisms = maize (Zea mays)
#Description = Binding site of tobacco nuclear factor (GCBP-2) found in the maize (Z.m.) GapC4 (Glyceraldehyde-3-phosphate dehydrogenase 4) gene promoter; Located between -293 and -285; See S000350;
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0

#ID = S000430
#Short = GCCCORE
#W = 6
#Organisms = Arabidopsis thaliana,Lycopersicon esculentum (tomato)
#Description = Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; See S000036, S000232, S000332; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG));
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000277
#Short = GCN4OSGLUB1
#W = 7
#Organisms = rice (Oryza sativa)
#Description = "GCN4 motif" found in GluB-1 gene in rice (O.s.); Required for endosperm-specific expression; See S000276; AACA and ACGT motifs was found sufficient to confer a detectable level of endosperm expression; See S000353, S000354; This motif is the recognition site for a basic leucine zipper transcription factor that belongs to the group of maize Opaque-2 (O2)-like proteins; Although all the RISBZ proteins are able to interact with the GCN4 motif, only RISBZ1 is capable of activating the gene expression;
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000360
#Short = GGTCCCATGMSAUR
#W = 8
#Organisms = Soybean (Glycine max)
#Description = Sequence found in NDE element in Soybean (G.m.) SAUR (Small Auxin-Up RNA) 15A gene promoter; Involved in auxin responsiveness; See S000270, S000359;
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000451
#Short = GLMHVCHORD
#W = 9
#Organisms = Hordeum vulgare (barley),Triticum aestivum (wheat)
#Description = "GLM (GCN4-like motif)" found in the promoter of barley (H.v.) B1- and c-hordein gene; Involved in the nitrogen response of c-hordein promoter; R=A/G; S=C/G; See also S000277 (GCN4OSGLUB1); SPA, a seed-specific basic leucine zipper protein from wheat, can activate transcription from the GCN4-like motif (GLM) of -326 LMWG-1D1 promoter (Albani et al., 1997);
0.5	0.0	0.5	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.5	0.5	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000045
#Short = GLUTAACAOS
#W = 12
#Organisms = rice (Oryza sativa)
#Description = "glutelin common motif"; "AACA motif"; Conserved in all member of rice (0.s.) glutelin; -74 to -64;
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000046
#Short = GLUTEBOX1OSGT2
#W = 18
#Organisms = rice (Oryza sativa)
#Description = "Box 1" of rice (O.s.) glutelin Gt2 gene family promoter regions; nuclear factor binding site;
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000128
#Short = GLUTEBOX1OSGT3
#W = 19
#Organisms = rice (Oryza sativa)
#Description = "Box 1" of rice (O.s.) glutelin Gt3 gene family promoter region; See S000128 GLUTEBOX2A;
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000047
#Short = GLUTEBOX2OSGT2
#W = 11
#Organisms = rice (Oryza sativa)
#Description = "Box II" of rice (O.s.) glutelin Gt2 gene family; nuclear factor binding site;
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000129
#Short = GLUTEBOX2OSGT3
#W = 15
#Organisms = rice (Oryza sativa)
#Description = "Box 2" of rice (O.s.) glutelin Gt3 gene family promoter region; See S000128 GLUTEBOX1A;
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0

#ID = S000048
#Short = GLUTEBP1OS
#W = 14
#Organisms = rice (Oryza sativa)
#Description = "Glutelin BP-1"; Binding site in the promoter region of glutelin Gt3 gene family of nuclear factor (PB-1); PB-1 is observed only in nuclear extract of developing seeds;
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000049
#Short = GLUTEBP2OS
#W = 19
#Organisms = rice (Oryza sativa)
#Description = "Glutelin BP-2"; Binding with nuclear factors from developing seeds;
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0

#ID = S000050
#Short = GLUTECOREOS
#W = 11
#Organisms = rice (Oryza sativa)
#Description = Core site required for binding of the trans-acting factor in the promoter region of rice (O.s.) glutelin (type 2 glutelin gene family);
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000372
#Short = GMHDLGMVSPB
#W = 10
#Organisms = soybean (Glycine max)
#Description = Binding site of the soybean homeodomein leucine zipper proteins (GmHdl56, GmHdl57); Found in the phosphate response domain of the soybean VspB promoter; Located between -536 and -527; VspB encodes vacuolar glycoprotein acid phosphatase that serve as vegetative storage protein;
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0

#ID = S000150
#Short = GRAZMRAB17
#W = 12
#Organisms = maize (Zea mays)
#Description = "GRA"; GC-rich rab activator; Found in the promoter of ABA responsive rab17 gene from maize (Z.m.); Important for transcription in leaves but not in embryos;  See S000200, S000401 and S000402;
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000220
#Short = GRAZMRAB28
#W = 9
#Organisms = maize (Zea mays)
#Description = "GRA"; "GC-rich rab activator"; Found in the promoter of ABA responsive rab28 gene from maize (Z.m.); Similar (seven of 12 bases) to the GRA element from the maize rab17 promoter (S000150; GRAZMRAB17); Found at -138 to -130;
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000364
#Short = GREGIONNTPRB1B
#W = 24
#Organisms = Tobacco (Nicotiana tabacum)
#Description = "G region" found in tobacco (N.t.) PRB-1b gene promoter; Located at -201 to -178; Binding site of nuclear protein; Required for ethylene induction; Contains an 11bp sequence, TAAGAGCCGCC, which is highly conserved in the promoter of ethylene-induced PR genes; Contains a G box motif; See S000365;
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0

#ID = S000198
#Short = GT1CONSENSUS
#W = 6
#Organisms = pea (Pisum sativum),oat (Avena sativa),rice (Oryza sativa),tobacco (Nicotiana tabacum),Arabidopsis thaliana,spinach (Spinacia oleracea),bean
#Description = Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; R=A/G; W=A/T; For a compilation of related GT elements and factors, see Villain et al. (1996); GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression;
0.0	0.0	1.0	0.0
0.5	0.0	0.5	0.0
0.5	0.0	0.0	0.5
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.5	0.0	0.0	0.5

#ID = S000125
#Short = GT1CORE
#W = 6
#Organisms = pea (Pisum sativum)
#Description = Critical for GT-1 binding to box II of rbcS; See S000051 GT1MOTIF1;  For a compilation of related GT elements and factors, see Villain et al. (1996);
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000453
#Short = GT1GMSCAM4
#W = 6
#Organisms = Glycine max (soybean)
#Description = "GT-1 motif" found in the promoter of soybean (Glycine max) CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression; See also S000198 (GT-1 consensus);
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000051
#Short = GT1MOTIFPSRBCS
#W = 12
#Organisms = pea (Pisum sativum)
#Description = "GT-1 motif"; "Consensus sequence of rbcS BOX II, III, II', III'"; "GT-1 box"; 5' upstream region (-151) of pea (P.s.) rbcS gene; binding with trans factor GT-1; See S000125 GT1CORE; K=G/T; W=A/T; R=A/G; For a compilation of related GT elements and factors, see Villain et al. (1996);
0.0	0.0	0.5	0.5
0.5	0.0	0.0	0.5
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.5	0.0	0.5	0.0
0.5	0.0	0.0	0.5
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.5	0.0	0.0	0.5
0.5	0.0	0.5	0.0
0.5	0.0	0.0	0.5

#ID = S000207
#Short = GT2OSPHYA
#W = 9
#Organisms = rice (Oryza sativa),oat (Avena sativa)
#Description = GT-2 (a rice nuclear protein) binding site in a rice (O.s.) phyA promoter; phyA gene are transcriptionaly repressed in response to light; One of GT elements; For a compilation of related GT elements and factors, see Villain et al. (1996); The HMG-1/Y protein PF1 stimulates binding of the GT-2 to PHYA gene promoter;
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0

#ID = S000378
#Short = GTGANTG10
#W = 4
#Organisms = tabacco(Nicotiana tabacum)
#Description = "GTGA motif" found in the promoter of the tobacco (N.t.) late pollen gene g10 which shows homology to pectate lyase and is the putative homologue of the tomato gene lat56; Located between -96 and -93; See S000280;
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0

#ID = S000200
#Short = HBOXCONSENSUSPVCHS
#W = 15
#Organisms = bean (Phaseolus vulgaris),tobacco
#Description = "H-box"; Consensus sequence of H-boxes found in bean (Phaseolus vulgaris) chs15 gene promoter; Essential for both light regulation and elicitor induction; Similar sequence was found in tobacco Tnt1 retrotransposon promoter (LTR); Tnt1 is induced by wounding and by abiotic stress; "KAP-2" binds to the H-box and stimulates transcription from a promoter harboring the H-box; "KAP-2" shares sequence similarity to the large subunit of mammalian Ku autoantigen;  See S000150, S000402 and S000401;
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000361
#Short = HBOXPVCHS15
#W = 20
#Organisms = bean (Phaseolus vulgaris)
#Description = Binding site of two bean protein factors, KAP-1 and KAP-2; KAP-1 is a 97 kDa polypeptide; KAP-2 comprises two polypeptides of 76 kDa and 56 kDa; Elicitation of bean cell with glutathione causes a rapid increase in specific activities of KAP-1 and KAP2;
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
1.0	0.0	0.0	0.0

#ID = S000233
#Short = HDMOTIFPCPR2
#W = 11
#Organisms = parsley (Petroselinum crispum)
#Description = HD (homeodomain) protein target site in parsley (P.c.) pathogenesis-related protein 2 (PR2); A potential in vivo target site;
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0

#ID = S000373
#Short = HDZIP2ATATHB2
#W = 9
#Organisms = Arabidopsis thaliana
#Description = Binding site of the Arabidopsis (A.T.) homeobox gene (ATHB-2) found in its own promoter; Located between -72 and -80; Similar to the HD-ZIP-2 binding consensus sequence; ATHB-2 is regulated by light signals which function as a negative autoregulator of its own gene; M=C/A;
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.5	0.5	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0

#ID = S000475
#Short = HDZIPIIIAT
#W = 11
#Organisms = Arabidopsis thaliana
#Description = Ath b-9 HD-Zip (HD-Zip-9), a member of a small family of HD-Zip proteins (HD-ZIP III), in Arabidopsis recognize this sequence; See also S000371; S=G/C;
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.5	0.5	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000146
#Short = HEXAMERATH4
#W = 6
#Organisms = Arabidopsis thaliana
#Description = hexamer motif of Arabidopsis thaliana (A.t.) histone H4 promoter;
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0

#ID = S000334
#Short = HEXAT
#W = 8
#Organisms = Arabidopsis thaliana
#Description = "Hex motif"; Binding site of Arabidopsis (A.t.) bZIP protein TGA1 and G box binding factor GBF1; TGA1 and members of the GBF family differ in their DNA binding properties; G-Box-like element;
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0

#ID = S000053
#Short = HEXMOTIFTAH3H4
#W = 6
#Organisms = wheat (Triticum aestivum),CaMV,Oryza sativa (rice)
#Description = "hexamer motif" found in promoter of wheat (T.a.) histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat (T.a.) nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; "hexamer motif" in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene; See S000076, S000267; Rice OBF1-homodimer-binding site (Shimizu et al.);
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000054
#Short = HSE
#W = 14
#Organisms = animal,plant,Drosophila,tomato (Lycopersicon peruvianum)
#Description = "HSE (heat shock response element)"; consensus sequence found in the promoter regions of heat shock protein genes; HSF binding site; HsfA3, a new member of the Hsf (heat stress transcription factor) family; was isolated by yeast two-hybrid screening, using HsfA1 as a bait; HsfA3 is a single copy gene with all conserved sequence elements characteristic of a heat stress transcription factor;
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.25	0.25	0.25	0.25
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.25	0.25	0.25	0.25
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0

#ID = S000056
#Short = HSELIKENTACIDICPR1
#W = 15
#Organisms = tobacco (Nicotiana tabacum)
#Description = "HSE-like motif" in -56 region of acidic PR1 gene of tobacco (N.t.); not found in basic PR1 gene;
0.0	1.0	0.0	0.0
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.0	0.0	1.0	0.0

#ID = S000057
#Short = HSELIKENTGLN2
#W = 10
#Organisms = tobacco (Nicotiana tabacum)
#Description = "HSE-like sequence" in 5' upstream region of beta-1,3-glucanase gene (GLN2) of tobacco (N.t.);
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000466
#Short = HSRENTHSR203J
#W = 12
#Organisms = Nicotiana tabacum (tobacco)
#Description = "HSRE(HSR203 responsive element)" in tobacco (N.t.) responsible for the marked induction of the HSR203J gene during the HR (hypersensitive response); HSR203J is specifically activated during the early steps of incompatible plant/pathogen interactions;
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0

#ID = S000345
#Short = HY5AT
#W = 12
#Organisms = Arabidopsis thaliana
#Description = "G box"; Binding site of Arabidopsis bZIP protein HY5; HY5 is constitutively nuclear localized and is involved in light regulation of transcriptional activity of the promoters containing the G-box; See S000041, S000042, S000229; HY5 abundance peaks in early seedling development, consistent with its role in promoting photomorphogenesis; HY5 stability and activity is regulated by phosphorylation in its COP1 binding domain; HY5 regulates stimulus-induced development of root and hypocotyl;
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000124
#Short = IBOX
#W = 6
#Organisms = tomato (Lycopersicon esculentum),Arabidopsis thaliana
#Description = "I box"; "I-box"; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; I box (Giuliano et al. 1988); Binding site of LeMYB1, that is a member of  a novel class of myb-like proteins; LeMYBI act as a transcriptional activator;
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0

#ID = S000199
#Short = IBOXCORE
#W = 5
#Description = "I box"; "I-box"; Conserved sequence upstream of light-regulated genes; Conserved sequence upstream of light-regulated genes of both monocots and dicots; See IBOX (S000124);
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000424
#Short = IBOXCORENT
#W = 7
#Organisms = Nocotiana plumbaginifolia (tobacco)
#Description = "I-box core motif" in the CAMs (conserved DNA modular arrays) associated with light-responsive promoter regions; See S000124 (GATAAG), S000199 (GATAA), S000213;
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.5	0.0	0.5	0.0

#ID = S000423
#Short = IBOXLSCMCUCUMISIN
#W = 13
#Organisms = Cucumis melo L. (melon)
#Description = "I-box-like sequence" found in the region (from -254 to -215) of cucumisin (a subtilisin-like serine protease) in the fruit of melon (Cucumis melo L.); I-box-like sequence functions as a negative regulatory element; See S000199 (I-box, GATAA), S000124 (I-box, GATAAG);
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000463
#Short = IDE1HVIDS2
#W = 18
#Organisms = Hordeum vulgare (barley)
#Description = IDE1 (iron-deficiency-responsive element 1) found at -153/-136 of barley IDS2 (iron deficiency specific clone 2) gene promoter; See also S000464;
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0

#ID = S000464
#Short = IDE2HVIDS2
#W = 27
#Organisms = Hordeum vulgare (barley)
#Description = IDE2 (iron-deficiency-responsive element 2) found at -262/-236 of barley IDS2 (iron deficiency specific clone 2) gene promoter; See also S000463;
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000445
#Short = IDRSZMFER1
#W = 14
#Organisms = Zea mays (maize),Arabidopsis thaliana
#Description = "IDRS" (Iron-Dependent Regulatory Sequence) found in maize and Arabidopsis ferritin genes (Fer1); IDRS is responsible for transcriptional repression of ZmFer1 gene under low iron supply conditions; S=C/G; K=G/T; IDRS is not involved in the Fe-regulated expression of the AtAPX1 gene (Fourcroy et al., 2004);
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.5	0.5	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.5	0.5
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000395
#Short = INRNTPSADB
#W = 8
#Organisms = tobacco (Nicotiana tabacum)
#Description = "Inr (initiator)" elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box;
0.0	0.5	0.0	0.5
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.25	0.25	0.25	0.25
0.0	0.0	0.0	1.0
0.0	0.5	0.0	0.5
0.0	0.5	0.0	0.5

#ID = S000086
#Short = INTRONLOWER
#W = 6
#Organisms = maize (Zea mays)
#Description = "3' intron-exon splice junctions"; Plant intron lower sequence; Consensus sequence for plant introns;
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0

#ID = S000085
#Short = INTRONUPPER
#W = 9
#Organisms = maize (Zea mays)
#Description = "5' exon-intron splice junctions" of plant introns; Plant intron upper sequence; Consensus sequence for plant introns;
0.5	0.5	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0

#ID = S000505
#Short = IRO2OS
#W = 7
#Organisms = Oryza sativa (rice)
#Description = OsIRO2-binding core sequence; "G-box plus G"; Transcription factor OsIRO2 is induced exclusively by Fe deficiency;
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0

#ID = S000388
#Short = JASE1ATOPR1
#W = 10
#Organisms = Arabidopsis thaliana
#Description = "JASE1"found in promoter of Arabidopsis thaliana 12-oxo-phytodienoic acid-10,11-reductase (OPR1) gene; Located between -179 and -170; Involved in up-regulation by both senescence and JA;
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000389
#Short = JASE2ATOPR1
#W = 13
#Organisms = Arabidopsis thaliana
#Description = "JASE2"found in promoter of Arabidopsis thaliana 12-oxo-phytodienoic acid-10,11-reductase (OPR1) gene; Located between -112 and -100; Involved in up-regulation by both senescence and JA; JASE2 contains a mixed A/C box-like motif;
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000384
#Short = JERECRSTR
#W = 24
#Organisms = periwinkle(Catharanthus roseus)
#Description = "JERE" (jasmonate- and elicitor-responsive element) found in the periwinkle(C.R.) strictosidine synthase(Str) gene promoter; Located between -100 and -58; ORCA1, ORCA2 and ORCA3 bind specifically to the JERE of the Str promoter; Elicitor and MeJA rapidly induce Orca2, but not Orca1 mRNA levels; ORCA3 mRNA accumulation was rapidly induced by the metyljasmonate;
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0

#ID = S000386
#Short = L1BOXATPDF1
#W = 8
#Organisms = Arabidopsis thaliana,Gossypium spp (cotton)
#Description = "L1 box" found in promoter of Arabidopsis thaliana (A.t.) PROTODERMAL FACTOR1 (PDF1) gene; Located between -134 and -127; Involved in L1 layer-specific expression; L1-specific homeodomain protein ATML can bind to the "L1 box"; Y=C/T;  A cotton fiber gene, RD22-like 1 (RDL1), contains a homeodomain binding L1 box and a MYB binding motif (Wang et al., 2004); HDZip IV; See also S000371;
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.5	0.0	0.5
1.0	0.0	0.0	0.0

#ID = S000504
#Short = L1DCPAL1
#W = 12
#Organisms = Daucus carota (carrot)
#Description = "L1" element, found in PAL1 promoter in carrot (Daucus carota), is a protoplastization (dilution) responsive element; L1 contains Box L-like sequence (ACCTACCC); see also S000492 (BOXL CORE of DC PAL1);
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000503
#Short = L4DCPAL1
#W = 12
#Organisms = Daucus carota (carrot)
#Description = "L4" element, found in PAL1 promoter in carrot (Daucus carota), is a UV-B responsive element; L4 contains Box L-like sequence (TCCAACCA); see also S000492 (BoxL core of DC PAL);
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000126
#Short = LBOXLERBCS
#W = 11
#Organisms = tomato (Lycopersicon esculentum),tobacco (Nicotiana tabacum)
#Description = "L box"; Conserved sequence found in rbcS upstream sequences of both tomato (L.e.) and tobacco;
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000432
#Short = LEAFYATAG
#W = 7
#Organisms = Oryza sativa (rice),Arabidopsis thaliana
#Description = Target sequence of LEAFY in the intron of AGAMOUS gene in Arabidopsis; See Lohmann et al. Cell 105:793-803 (2003);
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0

#ID = S000465
#Short = LECPLEACS2
#W = 8
#Organisms = Lycopersicon esculentum (tomato)
#Description = Core element in LeCp (tomato Cys protease) binding cis-element (from -715 to -675) in LeAcs2 gene;
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000060
#Short = LEGUMINBOXLEGA5
#W = 28
#Organisms = pea (Pisum sativum),tobacco (Nicotiana tabacum),Vicia faba
#Description = "legumin box" in legA 5' legumin gene promoter in legumin;
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.5	0.0	0.0	0.5
0.5	0.0	0.5	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.5	0.5	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0

#ID = S000061
#Short = LREBOX2PSRBCS3
#W = 15
#Organisms = pea (Pisum sativum),Arabidopsis thaliana
#Description = "LRE (light-responsive element) Box II" of pea (P.s.) rbcS-3A gene; GT-1 binding; "GT-motif"; "GT1 motif"; Some similarity to SV40 enhancer core sequence;  For a compilation of related GT elements and factors, see Villain et al. (1996); "BoxII" Binding site of transcriptional factor GTI; Located at -152 to -138; Confers light responsiveness;
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0

#ID = S000062
#Short = LREBOX3PSRBCS3
#W = 15
#Organisms = pea (Pisum sativum)
#Description = "LRE (light-responsive element) Box III" of pea (P.s.) rbcS-3A gene; GT-1 binding;  For a compilation of related GT elements and factors, see Villain et al. (1996);
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0

#ID = S000303
#Short = LREBOXIIPCCHS1
#W = 10
#Organisms = parsley (Petroselinum crispum)
#Description = "BoxII"; Light responsive element (LRE) found in the parsley (P.c.) CHS-1 (chalcone synthase-1) gene promoter; Required for light responsiveness; nuclear protein binding site; Highly conserved in various light inducible gene promoters; See S000302;
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0

#ID = S000302
#Short = LREBOXIPCCHS1
#W = 10
#Organisms = parsley (Petroselinum crispum)
#Description = "BoxI"; Light responsive element (LRE) found in the parsley (P.c.) CHS-1 (chalcone synthase-1) gene promoter; Required for light responsiveness; nuclear protein binding site; See S000303; "MRECHS" (MRE=Myb Recognition Element)Recognition site of MYB305 and a novel factor PcMYB1 (Myb1 from P. crispum); PcMYB1 contains only one MYB repeat;
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000231
#Short = LRENPCABE
#W = 8
#Organisms = tobacco (Nicotiana plumbaginifolia)
#Description = "LRE"; A positive light regulatory element in tobacco (N.p.) CAB (cab-E) gene; Located at -241;
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000323
#Short = LS5ATPR1
#W = 10
#Organisms = Arabidopsis thaliana,tobacco (Nicotiana tabacum)
#Description = "LS5"; A negative regulatory element found in the Arabidopsis (A.t.) PR-1 gene promoter; Binding site of TGA2; NPR1 increased the binding of TGA2 to the element; NPR1 is essential in activating systemic, inducible plant defense response; See S000322; TGA6 expressed in roots in young seedlings; TGA2.1 is a direct transcriptional activator; TGA2.2 stabilizes TGA2.1 binding; NOTE: The motif sequence previously shown was that of LS7. The correction was made.
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000322
#Short = LS7ATPR1
#W = 10
#Organisms = Arabidopsis thaliana,tobacco (Nicotiana tabacum)
#Description = "LS7"; A positive salicylic acid-inducible element found in the Arabidopsis (A.t.) PR-1 gene promoter; Binding site of TGA1; NPR1 increased the binding of TGA2 to the element; NPR1 is essential in activating systemic, inducible plant defense responses; See S000323; TGA6 expressed in roots in young seedlings; TGA2.1 is a direct transcriptional activator; TGA2.2 stabilizes TGA2.1 binding; NOTE: The motif sequence previously shown was that of LS5. The correction was made. We are very sorry.
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0

#ID = S000250
#Short = LTRE1HVBLT49
#W = 6
#Organisms = barley (Hordeum vulgare)
#Description = "LTRE-1" (low-temperature-responsive element) in barley (H.v.) blt4.9 gene promoter; A new LTRE; A previously known LTRE is CCGAC;
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000157
#Short = LTREATLTI78
#W = 7
#Organisms = Arabidopsis thaliana,barley (Hordeum vulgare)
#Description = Putative low temperature responsive element (LTRE); Found in Arabidopsis thaliana (A.t.) low-temperature-induced (lti) genes, lti78 and lti65; Repeated four times in  lti78 which is also known as cor78 and rd29A (see S000152)(Baker et al., Plant Mol Biol 24:701(1994)); Found also in barley low temperature responsive genes, blt4.2, blt4.6, blt4.9 (lipid transfer genes); cold inducible; See LTRECORE (S000153); Also present in rab18, kin1, and kin2 (Nordin et al., 1993);
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000153
#Short = LTRECOREATCOR15
#W = 5
#Organisms = Arabidopsis thaliana,Brassica napus
#Description = Core of low temperature responsive element (LTRE) of cor15a gene in Arabidopsis (A.t.); A portion of repeat-C (C-repeat), TGGCCGAC, which is repeated twice in cor15a promoter (Baker et al., 1994);  ABA responsiveness; Involved in cold induction of BN115 gene from winter Brassica napus; LTRE; See S000157, S000152; Light signaling mediated by phytochrome is necessary for cold- or drought- induced gene expression through the C/DRE in Arabidopsis; See S000152;
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000063
#Short = MARABOX1
#W = 10
#Organisms = Drosophila,fly
#Description = "A-box" found in SAR(scaffold attachment region; or matrix attachment region, MAR);
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.5	0.0	0.5
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000064
#Short = MARARS
#W = 11
#Organisms = yeast
#Description = "ARS element"; Motif found in SAR (MAR);
0.5	0.0	0.0	0.5
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.5	0.0	0.5	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.5	0.0	0.0	0.5

#ID = S000065
#Short = MARCEN3
#W = 25
#Organisms = yeast
#Description = "CEN III element"; Motif found in SAR (MAR); centromere element;
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.5	0.0	0.0	0.5
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.25	0.25	0.25	0.25
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.5	0.0	0.0	0.5
0.5	0.0	0.0	0.5
0.5	0.0	0.0	0.5

#ID = S000067
#Short = MARTBOX
#W = 10
#Organisms = Drosophila,fly
#Description = "T-Box"; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR);
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.5	0.0	0.0	0.5
0.0	0.0	0.0	1.0
0.5	0.0	0.0	0.5
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.5	0.0	0.0	0.5
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0

#ID = S000151
#Short = MEJARELELOX
#W = 17
#Organisms = tomato (Lycopersicon esculentum)
#Description = MeJa-responsive element (MeJaRE) in tomato (L. e.) lipoxygenase (LOX) gene; Related to tomato lipoxygenase gene expression during development and for MeJa (methyl jasmonate)-responsiveness;
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.25	0.25	0.25	0.25
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0

#ID = S000251
#Short = MNF1ZMPPC1
#W = 8
#Organisms = maize (Zea mays)
#Description = "MNF1" binding site in maize (Z.m.) Ppc1 (phosphoenolpyruvate carboxylase) gene promoter; Involved in light induction;
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0

#ID = S000356
#Short = MREATCHS
#W = 12
#Organisms = Arabidopsis thaliana
#Description = "MREAtCHS (MRE = Myb Recognition Element)" found in the LRU (light-responsive unit) in Arabidopsis (A.t.) chalcone synthase (CHS) gene promoter; Required for UV-B and UV-A/blue light responsiveness; See S000355;
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000069
#Short = MRNA3ENDTAH3
#W = 10
#Organisms = wheat (Triticum aestivum),yeast
#Description = Cis element in 3' end region of wheat (T.a.) histone H3 mRNA; 3' end formation; Also found in histone genes of other plants, yeast, etc;
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0

#ID = S000274
#Short = MRNASTA1CRPSBD
#W = 12
#Organisms = Chlamydomonas reinhardtii
#Description = mRNA stability determinant found in 5'-UTR of psbD mRNA of Chlamydomonas reinhardtii (C.r.); Required for the stable accumulation; Located within the first 12 nucleotides of the leader region;
0.0	1.0	0.0	0.0
0.25	0.25	0.25	0.25
0.0	1.0	0.0	0.0
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.25	0.25	0.25	0.25
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25

#ID = S000275
#Short = MRNASTA2CRPSBD
#W = 7
#Organisms = Chlamydomonas reinhardtii
#Description = mRNA stability determinant found in 5'-UTR of psbD mRNA of Chlamydomonas reinhardtii (C.r.); Required for the stable accumulation; Located near position -30 relative to the AUG initiation codon;
0.25	0.25	0.25	0.25
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.0	0.0	1.0	0.0

#ID = S000236
#Short = MSACRCYM
#W = 9
#Organisms = Catharanthus roseus
#Description = "MSA (M-specific activator)" motif in Catharanthus roseus (C.r.) B-type cyclin (CYM) promoter; Essential for M phase-specific expression; Found at -66 to -58;
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0

#ID = S000408
#Short = MYB1AT
#W = 6
#Organisms = Arabidopsis thaliana
#Description = MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; W=A/T;
0.5	0.0	0.0	0.5
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000443
#Short = MYB1LEPR
#W = 7
#Organisms = Arabidopsis thaliana,Lycopersicon esculentum (tomato)
#Description = Tomato Pti4(ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1(GTTAGTT), G box (CACGTG));
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0

#ID = S000182
#Short = MYB26PS
#W = 8
#Organisms = pea (Pisum sativum)
#Description = Myb26 binding site; Myb26 recognizes the c-Myb and P-box-like binding sites representing cis-elements in the promoter regions of several phenylpropanoid biosynthetic genes; Identical to P-box in maize, and to Myb305 binding site in snapdragon;
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0

#ID = S000177
#Short = MYB2AT
#W = 6
#Organisms = Arabidopsis thaliana
#Description = Binding site for ATMYB2, an Arabidopsis MYB homolog;  ATMYB2 binds oligonucleotides that contained a consensus MYB recognition sequence (TAACTG), such as is in the SV40 enhancer and the maize bronze-1 promoter (Urao et al., Plant Cell 5:1529 (1993)); ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; See S000355;
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0

#ID = S000409
#Short = MYB2CONSENSUSAT
#W = 6
#Organisms = Arabidopsis thaliana
#Description = MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Y=C/T; K=G/T; See S000177 (MYB2), S000175 (MYBATRD22);
0.0	0.5	0.0	0.5
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.5	0.5
0.0	0.0	1.0	0.0

#ID = S000175
#Short = MYBATRD22
#W = 7
#Organisms = Arabidopsis thaliana
#Description = Binding site for MYB (ATMYB2) in dehydration-responsive gene, rd22; MYB binding site in rd22 gene of Arabidopsis thaliana; ABA-induction; Located at ca. -141 of rd22 gene; Also MYC at ca. -200 of rd22 gene; See S000174 (MYCATRD22); See S000355;
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000176
#Short = MYBCORE
#W = 6
#Organisms = Arabidopsis thaliana,animal,petunia (Petunia hybrida)
#Description = Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis;  ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis (Solano et al. EMBO J 14:1773 (1995)); See S000355;
0.0	1.0	0.0	0.0
0.25	0.25	0.25	0.25
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.5	0.0	0.5	0.0

#ID = S000502
#Short = MYBCOREATCYCB1
#W = 5
#Organisms = Arabidopsis thaliana
#Description = "Myb core" in the 18 bp sequence which is able to activate reporter gene without leading to M-phase-specific expression, found in the promoter of Arabidopsis thaliana cyclin B1:1 gene; the 18 bp sequence share homology with a sequence found in the N. sylvestris cyclin B1 promoter (Trehin et al., 1999; see S000283):
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0

#ID = S000181
#Short = MYBGAHV
#W = 7
#Organisms = barley (Hordeum vulgare),rice (Oryza sativa)
#Description = Central element of gibberellin (GA) response complex (GARC) in high-pI alpha-amylase gene in barley (H.v.); Similar to c-myb and v-myb consensus binding site; GAmyb binds specifically to the TAACAAA box in vitro; GAmyb is the sole GA-regulated transcriptional factor required for transcriptional activation of the high-pI alpha-amylase; GARC consist of the pyrimidine, TAACAAA and TATCCAC boxes; GARE in RAmy1A gene; GARE and pyrimidine box in RAmy1A are partially involved in sugar repression;
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000167
#Short = MYBPLANT
#W = 8
#Organisms = snapdragon (Antirrhinum majus),bean (Phaseolus vulgaris),petunia (Petunia hybrida),Arabidopsis thaliana,maize (Zea mays),parsley (Petroselinum crispum)
#Description = Plant MYB binding site; Consensus sequence related to box P in promoters of phenylpropanoid biosynthetic genes such as PAL, CHS, CHI, DFR, CL, Bz1; Myb305; M=A/C; W=A/T; See S000355; The AmMYB308 and AmMYB330 transcription factors from Antirrhinum majus regulate phenylpropanoid and lignin biosynthesis in transgenic tobacco;
0.5	0.5	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.5	0.0	0.0	0.5
1.0	0.0	0.0	0.0
0.5	0.5	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000179
#Short = MYBPZM
#W = 6
#Organisms = maize (Zea mays)
#Description = Core of consensus maize P (myb homolog) binding site; W=A/T; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genes (Grotewold et al. 1994); W=A/T;
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.5	0.0	0.0	0.5
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000180
#Short = MYBST1
#W = 5
#Organisms = potato (Solanum tuberosum)
#Description = Core motif of MybSt1 (a potato MYB homolog) binding site; MybSt1 cDNA clone was isolated by using CaMV 35S promoter domain A as a probe (Baranowskij et al. 1994); The Myb motif of the MybSt1 protein is distinct from the plant Myb DNA binding domain described so far;
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0

#ID = S000413
#Short = MYCATERD1
#W = 6
#Organisms = Arabidopsis thaliana
#Description = MYC recognition sequence (from -466 to -461) necessary for expression of erd1 (early responsive to dehydration) in dehydrated Arabidopsis; NAC protein bound specifically to the CATGTG motif (Tran et al., 2004)); NAC protein bound specifically to the CATGTG motif (Tran et al., 2004);
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0

#ID = S000174
#Short = MYCATRD22
#W = 6
#Organisms = Arabidopsis thaliana
#Description = Binding site for MYC (rd22BP1) in Arabidopsis (A.t.) dehydration-resposive gene, rd22; MYC binding site in rd22 gene of Arabidopsis thaliana; ABA-induction; Located at ca. -200 of rd22 gene; Also MYB at ca. -141 of rd22 gene; See also S000175 (MYBATRD22);
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0

#ID = S000407
#Short = MYCCONSENSUSAT
#W = 6
#Organisms = Arabidopsis thaliana
#Description = MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see S000144 (E-box; CANNTG), S000174 (MYCATRD22); N=A/T/G/C; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 (Chinnusamy et al., 2004);) This sequence is also known as RRE (R response element)(Hartmann et al., 2005);
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0

#ID = S000070
#Short = NAPINMOTIFBN
#W = 7
#Organisms = rape (Brassica napus)
#Description = Sequence found in 5' upstream region (-6, -95, -188) of napin (2S albumin) gene in Brassica napus (B.n.); Interact with a protein present in crude nuclear extracts from developing B. napus seeds;
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000359
#Short = NDEGMSAUR
#W = 30
#Organisms = Soybean (Glycine max)
#Description = "NDE" found in Soybean (G.m.) SAUR (Small Auxin-Up RNA) 15A gene promoter; Required for auxin responsiveness; Contains two adjacent sequences, TGTCTC (see S000270) and GGTCCCAT, which have been previously identified as putative auxin-responsive elements; See S000360;
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000461
#Short = NODCON1GM
#W = 6
#Organisms = Glycine max (soybean)
#Description = One of two putative nodulin consensus sequences; See also S000462 (NODCON2GM);
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000462
#Short = NODCON2GM
#W = 5
#Organisms = Glycine max (soybean)
#Description = One of two putative nodulin consensus sequences; See also S000461 (NODCON1GM);
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0

#ID = S000147
#Short = NONAMERATH4
#W = 9
#Organisms = Arabidopsis thaliana
#Description = Nonamer motif of Arabidopsis thaliana (A.t.) histone H4 promoter;
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0

#ID = S000071
#Short = NONAMERMOTIFTAH3H4
#W = 9
#Organisms = wheat (Triticum aestivum),CaMV
#Description = "Nonamer motif" found in promoter of wheat (T.a.) histone genes H3 and H4;
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0

#ID = S000242
#Short = NRRBNEXTA
#W = 8
#Organisms = Brassica napus
#Description = "NRR (negative regulatory region)" in promoter region of Brassica napus (B.n.) extA extensin gene; Removal of this region leads to expression in all tissues within the stem internode, petiole and root;
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000273
#Short = NTBBF1ARROLB
#W = 6
#Organisms = Agrobacterium rhizogenes
#Description = NtBBF1(Dof protein from tobacco) binding site in Agrobacterium rhizogenes (A.r.) rolB gene; Found in regulatory domain B (-341 to -306); Required for tissue-specific expression and auxin induction;
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0

#ID = S000162
#Short = O2F1BE2S1
#W = 10
#Organisms = Brazil nut tree (Bertholletia excelsa)
#Description = opaque-2 recognition site F1 in Bertholletia excelsa (Brazil nut tree) 2S storage protein gene (be2S1); O2 protein binds to F1, F2 and F3 sequences of be2S1 promoter; F1 is hybrid C/G box;
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0

#ID = S000163
#Short = O2F2BE2S1
#W = 10
#Organisms = Brazil nut tree (Bertholletia excelsa)
#Description = opaque-2 recognition site F2 in Bertholletia excelsa (Brazil nut tree) 2S storage protein gene (be2S1); O2 protein binds to F1, F2 and F3 sequences of be2S1 promoter; F2 is a new O2-binding sequence related to the O2 target sites of the Coix alpha-coxin, the maize b-32 genes and the AP-1 pseudopalindrome;
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000164
#Short = O2F3BE2S1
#W = 10
#Organisms = Brazil nut tree (Bertholletia excelsa)
#Description = opaque-2 recognition site F3 in Bertholletia excelsa (Brazil nut tree) 2S storage protein gene (be2S1); O2 protein binds to F1, F2 and F3 sequences of be2S1 promoter; F3 is hybrid of A/G box;
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000304
#Short = OBF5ATGST6
#W = 26
#Organisms = Arabidopsis (Arabidopsis thaliana)
#Description = "OBF5 (ocs element binding factor 5)" binding site found in the Arabidopsis (A.t.) GST6 gene promoter; Similar to Ocs sequence; Located between -426 and -401; See S000305; Overexpression of OBP3 lead to severe growth defect with altered root development and yellowish leaves; All OBP proteins contain transcriptional activation domains in their C-terminal region; Dof protein play important roles in plant growth and development; Binding site of OBF4 and OBF5; See S000305, S000346;
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000305
#Short = OBP1ATGST6
#W = 11
#Organisms = Arabidopsis (Arabidopsis thaliana)
#Description = OBP1, 4, and 5 (OBF binding protein) binding site found in the Arabidopsis (A.t.) GST6 gene promoter; Located between -398 and -388; OBP1 is able to stimulate the binding of OBF proteins to the GST6 promoter; See S000304; Overexpression of OBP3 lead to severe growth defect with altered root development and yellowish leaves; All OBP proteins contain transcriptional activation domains in their C-term. region; Dof protein play important roles in plant growth and development; See S000304;
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0

#ID = S000269
#Short = OCETYPEIIINTHISTONE
#W = 30
#Organisms = tobacco (Nicotiana tabacum)
#Description = "Type III element"; Oct-containing composite element Type III found in tobacco (N.t.) histone gene promoter; Oct (octomer) motif is paired with CCAAT-box to form Type III element; Required for S-phase specific and meristematic tissue-specific expression;
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.5	0.5	0.0

#ID = S000268
#Short = OCETYPEIINTHISTONE
#W = 11
#Organisms = tobacco (Nicotiana tabacum)
#Description = "Type II element"; Oct-containing composite element Type II found in tobacco (N.t.) histone gene promoter; Oct (octomer) motif is paired with TCA motif to form Type II element; Required for S-phase specific and meristematic tissue-specific expression;
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0

#ID = S000267
#Short = OCETYPEINTHISTONE
#W = 18
#Organisms = tobacco (Nicotiana tabacum)
#Description = "Type I element"; Oct-containing composite element Type I found in tobacco (N.t.) histone gene promoter; Oct (octomer) motif is paired with Hex motif to form Type I element; Required for S-phase specific and meristematic tissue-specific expression;
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.25	0.25	0.25	0.25
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0

#ID = S000158
#Short = OCSELEMENTAT
#W = 20
#Organisms = Agrobacterium tumefaciens,tobacco,Arabidopsis thaliana
#Description = "OCS element" in octopine synthase gene (OCS) of Ti-plasmid of Agrobacterium (A.t.); Binding with nuclear protein isolated from tobacco; See OCS motif (S000074); "ocs-like element"; Also found in Arabidopsis glutathione S-transferase gene (GST6); OBF (ocs element binding factor)-binding site; See S000346; Tandem OCSTF binding-sites are essential for the activity of the Ocs-element; The Ocs-element occures rarely in plant gene promoters; See S000357;
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.5	0.0	0.5
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.5	0.5	0.0
0.5	0.0	0.5	0.0
0.5	0.5	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.5	0.5
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.5	0.0	0.5
0.5	0.5	0.0	0.0
0.5	0.5	0.0	0.0

#ID = S000074
#Short = OCSENHANMOTIFAT
#W = 16
#Organisms = Agrobacterium tumefaciens,tobacco (Nicotiana tabacum),maize (Zea mays)
#Description = "OCS enhancer element" in octopine synthase gene (OCS) of Ti-plasmid of Agrobacterium tumefaciens (A.t.); Binding with nuclear protein isolated from tobacco and maize; See S000346; Tandem OCSTF binding-sites are essential for the activity of the Ocs-element; The Ocs-element occures rarely in plant gene promoters; See S000357; "OCS palindrome" found in tobacco (N.t.) OCS (Octopine synthase gene) promoter; Located at -193 to -178; Binding site of ASF-1; Confers expression of the gene;
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0

#ID = S000346
#Short = OCSGMGH24
#W = 24
#Organisms = Soybean (Glycine max)
#Description = "OCS element" found in the soybean (G.m) GH2/4 gene promoter; Required for auxin and salycylic acid responsiveness; Activated by both active and inactive auxin and salicylic acid analogues; See S000074, S000130, S000158, S000304; Tandem OCSTF binding-sites are essential for the activity of the Ocs-element; The Ocs-element occurs rarely in plant gene promoters; See S000357;
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000357
#Short = OCSGMHSP26A
#W = 20
#Organisms = Soybean (Glycine max)
#Description = Ocs element found in soybean (Glycine max) heat shock gene (Gmhsp26-A) promoter; The element is a functional ocs-element; The element did not affect the promoter's response to heat or wounding;
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000076
#Short = OCTAMERMOTIFTAH3H4
#W = 8
#Organisms = wheat (Triticum aestivum),maize (Zea mays),CaMV,Arabidopsis thaliana,tobacco (Nicotiana tabacum)
#Description = "Octamer motif" found in promoter of wheat (T.a.) histone genes H3 and H4, and corn histone genes H3 and H4; Arabidopsis histone H4; "histone-specific octamer"; About half of the Oct motifs are present together with another element, HexA, TCA or CCAAT-box, forming OCES (Oct-containing composite elements);
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0

#ID = S000116
#Short = OCTAMOTIF2
#W = 8
#Organisms = maize (Zea mays)
#Description = Octamer motif found in histone-gene-specific consensus sequences; 200 base upstream from the initiation codon ATG; Exist in all of seven plant histone genes;
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000017
#Short = OPAQUE2ZM22Z
#W = 10
#Organisms = maize (Zea mays)
#Description = Opaque-2 (O2) target sequence in maize (Z.m.) 22- and 27-kD zein promoters; "ACGT motif"; Related to seed expression; "O2 target sequence"; Gene: maize 22-kD zein; transacting factor: 02;
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0

#ID = S000077
#Short = OPAQUE2ZMB32
#W = 10
#Organisms = maize (Zea mays)
#Description = "opaque-2 binding site" of maize (Z.m.) b-32 (type I ribosome-inactivating protein gene; O2; O2S; O2S and GARE form a gibberellin response complex (GARC)(Rogers and Rogers, 1992);
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.5	0.0	0.5
0.5	0.0	0.5	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0

#ID = S000467
#Short = OSE1ROOTNODULE
#W = 6
#Organisms = Vicia faba,Medicago truncatula,Glycine max,Sesbania rostrata
#Description = One of the consensus sequence motifs of organ-specific elements (OSE) characteristic of the promoters activated in infected cells of root nodules; See also S000468;
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000468
#Short = OSE2ROOTNODULE
#W = 5
#Organisms = Vicia faba,Medicago truncatula,Glycine max,Sesbania rostrata
#Description = One of the consensus sequence motifs of organ-specific elements (OSE) characteristic of the promoters activated in infected cells of root nodules; See also S000467;
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0

#ID = S000459
#Short = P1BS
#W = 8
#Organisms = Arabidopsis thaliana,Lycopersicon esculentum (tomato),Medicago truncatula,Hordeum vulgare (barley)
#Description = PHR1-binding sequence found in the upstream regions of phosphate starvation responsive genes from several plant species; phr1 (phosphate starvation response 1) gene codes for PHR1 protein related to PSR1 gene in C. reinhardtii;
0.0	0.0	1.0	0.0
0.25	0.25	0.25	0.25
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.25	0.25	0.25	0.25
0.0	1.0	0.0	0.0

#ID = S000137
#Short = PALBOXAPC
#W = 6
#Organisms = parsley (Petroselinum crispum)
#Description = Box A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); "None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation." (Logemann et al., 1995); See also S000136 (Box P), S000138 (Box L);
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000138
#Short = PALBOXLPC
#W = 11
#Organisms = parsley (Petroselinum crispum)
#Description = Box L; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); "None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation." (Logemann et al., 1995); See also S000136 (Box P), S000137 (Box A);
0.0	0.5	0.0	0.5
0.0	1.0	0.0	0.0
0.0	0.5	0.0	0.5
0.0	0.5	0.0	0.5
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.5	0.0	0.0	0.5
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000136
#Short = PALBOXPPC
#W = 14
#Organisms = parsley (Petroselinum crispum)
#Description = Box P; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); "None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation." (Logemann et al., 1995); See also S000137 (Box A), S000138 (Box L);
0.0	0.5	0.0	0.5
0.0	0.0	0.0	1.0
0.0	0.5	0.0	0.5
0.0	0.5	0.0	0.5
0.5	0.5	0.0	0.0
0.5	0.5	0.0	0.0
0.0	1.0	0.0	0.0
0.5	0.5	0.0	0.0
1.0	0.0	0.0	0.0
0.5	0.5	0.0	0.0
0.0	1.0	0.0	0.0
0.5	0.5	0.0	0.0
0.5	0.5	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000255
#Short = PALINDROMICCBOXGM
#W = 8
#Organisms = Glycine maxb(soybean),Arabidopsis thaliana
#Description = Palindromic C-box in soybean (G.m.); bZIP factors, STGA1 and STFs (STF1 and STF2) found in soybean apical hypocotyl, bind to this sequence;
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000336
#Short = PASNTPARA
#W = 20
#Organisms = tobacco (Nicotiana tabacum)
#Description = "pas"; as-1-related element found in the tobacco (N.t.) parA gene promoter; Involved in Cadmium responsiveness; Not related to copper responsiveness; Located between -68 and -49;
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000196
#Short = PE1ASPHYA3
#W = 22
#Organisms = oat (Avena sativa)
#Description = PE1; Positively acting element found at -381 to -348 of oat (A.s.) phyA3 promoter; A general positive element (Terzaghi & Cashmore, 1995);
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0

#ID = S000455
#Short = PE2FNTRNR1A
#W = 8
#Organisms = Nicotiana tabacum (tobacco)
#Description = "pE2F (proximal E2F elemen)" at -143bp of tobacco (N.t.) RNR1a promoter; E2F factors involved in gene induction at the G1/S transition of the cell cycle; Important for regulating specific RNR1a (ribonucleotide reductase large subunit) gene expression in response to UV-C irradiation; See S000367;
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0

#ID = S000197
#Short = PE3ASPHYA3
#W = 31
#Organisms = oat (Avena sativa)
#Description = PE3; Positively acting element found at -111 to -81 (Bruce et al., 1991) of oat (A.s.) phyA3 promoter;
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0

#ID = S000381
#Short = PIATGAPB
#W = 8
#Organisms = Arabidopsis thaliana
#Description = "PI" found in the Arabidopsis thaliana(A.T.) GAPB gene promoter; Located between -157 and -150; Mutations in the "PI" resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.;
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000382
#Short = PIIATGAPB
#W = 20
#Organisms = Arabidopsis thaliana
#Description = "PII" found in the Arabidopsis thaliana(A.T.) GAPB gene promoter; Located between -69 and -50; Mutations in the "PII" resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.;
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000080
#Short = POLASIG1
#W = 6
#Organisms = pea (Pisum sativum),rice (Oryza sativa),Arabidopsis thaliana
#Description = "PolyA signal"; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in Arabidopsis (Loke et al. 2005);
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000081
#Short = POLASIG2
#W = 7
#Organisms = rice (Oryza sativa),animal
#Description = "PolyA signal"; poly A signal found in rice alpha-amylase; -10 to -30 in the case of animal genes. AATAAA; AATAAT; AATTAAA; AATAAG;
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000088
#Short = POLASIG3
#W = 6
#Organisms = maize (Zea mays)
#Description = "Plant polyA signal"; Consensus sequence for plant polyadenylation signal;
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000245
#Short = POLLEN1LELAT52
#W = 5
#Organisms = Lycopersicon esculentum (tomato)
#Description = One of two co-dependent regulatory elements responsible for pollen specific activation of tomato (L.e.) lat52 gene; Found at -72 to -68 region; See S000246 (POLLEN2LELAT52); AGAAA and TCCACCATA (S000246) are required for pollen specific expression; Also found in the promoter of tomato endo-beta-mannanase gene (LeMAN5) gene (Filichkin et al. 2004);
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000246
#Short = POLLEN2LELAT52
#W = 9
#Organisms = tomato (Lycopersicon esculentum)
#Description = One of two co-dependent regulatory elements responsible for pollen specific activation of tomato (L.e.) lat52 gene; Found at -60 to -52 region; See S000245 (POLLEN1LELAT52); AGAAA (S000245) and TCCACCATA are required for pollen specific expression;
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0

#ID = S000089
#Short = PR2GCNT
#W = 11
#Organisms = tobacco (Nicotiana tabacum)
#Description = "GC element" conserved in the 5' upstream regions of group 2 PR protein genes (beta-1,3-glucanase (GLN2), chitinase (CHN17, CHN50)) of tobacco (N.t.);
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.5	0.0	0.5	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000450
#Short = PREATPRODH
#W = 6
#Organisms = Arabidopsis thaliana
#Description = "PRE (Pro- or hypoosmolarity-responsive element) found in the promoter region of  proline dehydrogenase (ProDH) gene in Arabidopsis; Core of 9-bp sequence ACTCATCCT which is necessary for the efficient expression of ProDH in response to L-Pro and hypoosmolarity (Satoh et al., 2002); ATB2-binding site; Similar to GCN4 motif (ATGA(C/G)TCAT); ATB2 subgroup of bZIP transcription factors function as transcriptional activator for hypoosmolarity-inducible ProDH (Satoh et al., 2004);
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000506
#Short = PRECONSCRHSP70A
#W = 24
#Organisms = Chlamydomonas reinhardtii
#Description = Consensus sequence of PRE (plastid response element) in the promoters of HSP70A in Chlamydomonas; Involved in induction of HSP70A gene by both MgProto and light; S=G/C; Y=C/T; R=A/G; H=T/C/A; D=A/T/G;
0.0	0.5	0.5	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.5	0.0	0.5
0.25	0.25	0.25	0.25
0.5	0.0	0.5	0.0
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.3333333333333333	0.3333333333333333	0.0	0.3333333333333333
0.3333333333333333	0.0	0.3333333333333333	0.3333333333333333

#ID = S000230
#Short = PREMOTIFNPCABE
#W = 12
#Organisms = tobacco (Nicotiana plumbaginifolia)
#Description = Motif sequence repeated many times in two positive regulatory elements, PRE1 (-1554 to -1182) and PRE2 (-747 to -516) found far upstream in the tobacco (N.p.) CAB gene (cab-E) promoter; Confer maximum levels of photoregulated expression;
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0

#ID = S000091
#Short = PROLAMINBOX
#W = 15
#Organisms = rice (Oryza sativa),maize (Zea mays),barley (Hordeum vulgare),wheat (Triticum aestivum)
#Description = "Prolamin Box"; -330 consensus sequence found in all zein genes; prolamin type consensus sequence found in the 5'upstream regions of seed storage proteins of maize (22 kDa zein); similar sequence found in 19 kDa zein, B-hordein (barley), gamma-gliadin (wheat), high M.W. glutenin (wheat); ESBF-1 enhanced transcriptional activation mediated by SPA (the endosperm-specific wheat bZIP factor);
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0

#ID = S000354
#Short = PROLAMINBOXOSGLUB1
#W = 7
#Organisms = rice (Oryza sativa)
#Description = "Prolamine box" found in the rice (O.s.) GluB-1 gene promoter; Involved in quantitative regulation of the GluB-1 gene; See S000276, S000277, S000278 (for elements in GluB-1); See S000001, S000091, S000265, S000341 (for Prolamin box);
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0

#ID = S000263
#Short = PROXBBNNAPA
#W = 8
#Organisms = Brassica napus
#Description = "prox B (proximal portion of B-box) found in napA gene of Brassica napus (B.n.); CA-rich sequence; Found between -130 and -124; Required for seed specific expression and ABA responsiveness; See S000262, S000264; dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABRE;
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000253
#Short = PSREGIONZMZM13
#W = 32
#Organisms = maize (Zea mays)
#Description = Pollen specific (PS) region in maize (Z.m.) ZM13 gene promoter; Found at -84 to -53;
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000298
#Short = PYRIMIDINEBOXHVEPB1
#W = 8
#Organisms = barley (Hordeum vulgare)
#Description = "Pyrimidine box" found in the barley (H.v.) EPB-1 (cysteine proteinase) gene promoter; Located between -120 to -113; Required for GA induction; See S000297, S000259;
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000259
#Short = PYRIMIDINEBOXOSRAMY1A
#W = 6
#Organisms = rice (Oryza sativa),barley (Hordeum vulgare)
#Description = Pyrimidine box found in rice (O.s.) alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this site; See S000265;
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0

#ID = S000244
#Short = QARBNEXTA
#W = 7
#Organisms = Brassica napus
#Description = "QAR (quantitative activator region)" in promoter region of Brassica napus (B.n.) extA extensin gene;
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0

#ID = S000254
#Short = QELEMENTZMZM13
#W = 6
#Organisms = maize (Zea mays)
#Description = "Q(quantitative)-element" in maize (Z.m.) ZM13 gene promoter; Found at -107 to -102; Involved in expression enhancing activity; ZM13 is a maize homolog of tomato LAT52 gene; ZM13 is a pollen-specific maize gene;
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000314
#Short = RAV1AAT
#W = 5
#Organisms = Arabidopsis (Arabidopsis thaliana)
#Description = Binding consensus sequence of Arabidopsis (A.t.) transcription factor, RAV1; RAV1 specifically binds to DNA with bipartite sequence motifs of RAV1-A (CAACA) and RAV1-B (CACCTG); RAV1 protein contain AP2-like and B3-like domains; The AP2-like and B3-like domains recognize the CAACA and CACCTG motifs, respectively; The expression level of RAV1 were relatively high in rosette leaves and roots; See S000315(CACCTG);
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000315
#Short = RAV1BAT
#W = 6
#Organisms = Arabidopsis (Arabidopsis thaliana)
#Description = Binding consensus sequence of an Arabidopsis (A.t.) transcription factor, RAV1; RAV1 specifically binds to DNA with bipartite sequence motifs of RAV1-A (CAACA) and RAV1-B (CACCTG); RAV1 protein contain AP2-like and B3-like domains; The AP2-like and B3-like domains recognize the CAACA and CACCTG motifs, respectively; The expression level of RAV1 were relatively high in rosette leaves and roots; See S000314(CAACA);
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0

#ID = S000094
#Short = RBCSBOX2PS
#W = 14
#Organisms = pea (Pisum sativum)
#Description = "rbcS box II"; 5' upstream region (-151) of pea (P.s.) rbcS gene; Binding with trans factor GT-1; one of GT-1 boxes;  For a compilation of related GT elements and factors, see Villain et al. (1996); GT-1 may act as a molecular switch modulated by calcium-dependent phosphorylation and dephosphorylation in response to light signals;
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0

#ID = S000095
#Short = RBCSBOX3PS
#W = 12
#Organisms = pea (Pisum sativum)
#Description = "rbcS box III"; 5' upstream region (-114) of pea (P.s.) rbcS gene; binding with trans factor GT-1; one of GT-1 boxes;  For a compilation of related GT elements and factors, see Villain et al. (1996);
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000127
#Short = RBCSCONSENSUS
#W = 7
#Organisms = tomato (Lycopersicon esculentum),petunia (Petunia hybrida),tobacco (Nicotiana tabacum),pea (Pisum sativum),soybean (Glycine max)
#Description = "rbcS general consensus sequence"; AATCCAA or AATCCAAC;
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000096
#Short = RBCSGBOXPS
#W = 11
#Organisms = pea (Pisum sativum)
#Description = "rbcS G-box"; 5'upstream region (-211) of pea rbcS gene; binding with trans factor GBF (CG-1); Light-responsiveness;
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000358
#Short = RBENTGA3
#W = 11
#Organisms = tobacco (Nicotiana tabacum)
#Description = "rbe (RSG binding element)" found in the tobacco (N.t.) GA3 gene promoter; Binding site of RSG (Repression of shoot growth); RSG is a bZIP transcriptional activator; RSG regulates the morphology of plants by controlling the endogenous amounts of GAs;
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0

#ID = S000195
#Short = RE1ASPHYA3
#W = 11
#Organisms = oat (Avena sativa),pea (Pisum sativum)
#Description = RE1 (putative repressor element) responsible for Pfr-directed repression of oat (A.s.) phyA3 phytochrome gene; Also found in pea AS1 (asparagine synthetase) gene (Ngai, Tsai, Coruzzi: Plant J 12:1021-1234 (1997));
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0

#ID = S000362
#Short = REALPHALGLHCB21
#W = 6
#Organisms = Lemna gibba
#Description = "REalpha" found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulation; See S000363;
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000363
#Short = REBETALGLHCB21
#W = 6
#Organisms = Lemna gibba
#Description = "REbeta" found in Lemna gibba Lhcb21 gene promoter; Located at -114 to -109; A GATA sequence created at a position six nucleotides upstream could replace the function of REbeta; Required for phytochrome regulation; See S000362;
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0

#ID = S000300
#Short = REGION1OSOSEM
#W = 16
#Organisms = rice (Oryza sativa)
#Description = "region 1" ABRE-like sequence found in rice (O.s.) Osem gene promoter; Important for regulation by ABA; See S000102, S000299; TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption;
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0

#ID = S000191
#Short = RGATAOS
#W = 9
#Organisms = rice (Oryza sativa),RTBV,rice tungro bacilliform virus
#Description = R-GATA (GATA motif binding factor) binding site; GATA motif is found at -143 to -135 of RTBV promoter; GATA motif is required for phloem-specific gene expression of Rice Tungro Bacilliform Virus (RTBV); See also RNFG1OS (S000188), RNFG2OS (S000189), and ABFOS (S000190);
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0

#ID = S000512
#Short = RHERPATEXPA7
#W = 6
#Organisms = Arabidopsis thaliana
#Description = "Right part of RHEs (Root Hair-specific cis-Elements)" conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patterns; K=G/T; W=T/A;
0.0	0.0	0.5	0.5
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.5	0.0	0.0	0.5

#ID = S000188
#Short = RNFG1OS
#W = 11
#Organisms = rice (Oryza sativa)
#Description = RNFG1 binding site; Box I; RNFG1 is one of two Rice Nuclear Factors required for phloem-specific gene expression of Rice Tungro Bacilliform Virus (RTBV); Box I is found at -3 to +8 of RTBV promoter; See also RNFG2OS (S000189);
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0

#ID = S000189
#Short = RNFG2OS
#W = 15
#Organisms = rice (Oryza sativa)
#Description = RNFG2 binding site; Box II; RNFG2 is one of two Rice Nuclear Factors required for phloem-specific gene expression of Rice Tungro Bacilliform Virus (RTBV); Box II is found at -53 to -39 of RTBV promoter; See also RNFG1OS (S000188); "Box II" is the binding site of bZIP protein RF2a and RF2b; RF2a and RF2b are predominantly expressed in vascular tissue (Dai et al.);
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0

#ID = S000098
#Short = ROOTMOTIFTAPOX1
#W = 5
#Organisms = Agrobacterium rhizogenes
#Description = Motif found both in promoters of rolD;
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0

#ID = S000099
#Short = RSEPVGRP1
#W = 12
#Organisms = bean (Phaseolus vulgaris)
#Description = "RSE (root-specific element)" of bean (P.v.) GRP1.8 gene; consensus sequence;See also S000288 and S000289;
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000289
#Short = RSEPVGRP18
#W = 26
#Organisms = bean (Phaseolus vulgaris)
#Description = "RSE (root-specific element)" found in bean (P.V.) grp1.8 gene promoter; Located at -98 to -73; Required also for vascular-specific expression in stem; See S000288, S000099;
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0

#ID = S000243
#Short = RSRBNEXTA
#W = 17
#Organisms = Brassica napus
#Description = "RSR (root specific region)" in promoter region of Brassica napus (B.n.) extA extensin gene;
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000010
#Short = RYREPEAT4
#W = 13
#Organisms = maize (Zea mays),wheat (Triticum aestivum),rice (Oryza sativa)
#Description = "RY repeat motif"; "Sph element"; seed expression; ABA; Gene: maize C1, wheat Em, rice rab16A, maize Rab17; Transacting factor: VP1 (maize C1); See S000105 RYREPEAT2 (CATGCAT); The RY sequence motif does not play a major role in VP1 or ABA regulation of Em gene in protoplast; VP1 gene is specifically required for expression of the maturation program in seed development;
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000264
#Short = RYREPEATBNNAPA
#W = 6
#Organisms = Brassica napus
#Description = "RY repeat" found in RY/G box (the complex containing the two RY repeats and the G-box) of napA gene in Brassica napus (B.n.); Found between -78 and -50; Required for seed specific expression; See S000262, S000263; dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABRE;
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000105
#Short = RYREPEATGMGY2
#W = 7
#Organisms = soybean (Glycine max)
#Description = "RY repeat motif (CATGCAT)"; Present in the 5' region of the soybean (G.m.) glycinin gene (Gy2);
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000100
#Short = RYREPEATLEGUMINBOX
#W = 7
#Organisms = legume,soybean (Glycine max)
#Description = "RY repeat (CATGCAY)" or legumin box found in seed-storage protein genes in legume such as soybean (G.m.);
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.5	0.0	0.5

#ID = S000102
#Short = RYREPEATVFLEB4
#W = 8
#Organisms = bean (Phaseolus vulgaris),soybean (Glycine max),Vicia faba,rice (Oryza sativa),Arabidopsis (Arabidopsis thaliana)
#Description = "RY repeat motif"; quantitative seed expression; Gene: Vicia faba LeB4; Soybean glycinin (Gy2); other dicot and monocot seed protein genes; "Sph box" found in rice (O.s.) Osem gene promoter; See S000010, S000299, S000300; Binding site of Arabidopsis B3-domain-containing transcription factor FUS3; TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption; FUS3 protein physically interact with two RY elements present in the AtGA3ox promoter (Curaba et al., 2004);
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0

#ID = S000223
#Short = S1FBOXSORPS1L21
#W = 6
#Organisms = spinach (Spinacia oleracea)
#Description = "S1F box" conserved both in spinach (S.o.) RPS1 and RPL21 genes encoding the plastid ribosomal protein S1 and L21, respectively; Negative element; Might play a role in downregulating RPS1 and RPL21 promoter activity (Lagrange et al., 1993); See S000211 (SITE1SORPS1), S000215 (S1FSORPL21);
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0

#ID = S000215
#Short = S1FSORPL21
#W = 8
#Organisms = spinach (Spinacia oleracea)
#Description = "S1F binding site" ("S1 site") in spinach (S.o.) RPL21 gene encoding the plastid ribosomal protein L21; Negative element; Might play a role in downregulating RPL21 promoter activity (Lagrange et al., 1993); See S000211 (SITE1SORPS1), S000166 (S2FSORPL21);
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0

#ID = S000166
#Short = S2FSORPL21
#W = 9
#Organisms = spinach (Spinacia oleracea)
#Description = "S2F binding site" ("S2 site") in spinach RPL21 gene encoding the plastid ribosomal protein L21; S2 site (CATACAWW) is conserved in promoter region of many nuclear genes encoding plastid proteins; Leaf-specific, light-independent regulatory element; S2 site is related to but different from the light-responsive GT-1 binding site (Lagrange et al., 1997);  For a compilation of related GT elements and factors, see Villain et al. (1996);
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0

#ID = S000156
#Short = SARECAMV
#W = 21
#Organisms = CaMV,Cauliflower mosaic virus
#Description = Salicylic acid responsive element found in CaMV 35S promoter; Identical to as-1; Binding with ASF-1 (Activation Sequence Factor-1); See AS1 (S000023);
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000435
#Short = SB1NPABC1
#W = 16
#Organisms = Nicotiana plumbaginifolia (tobacco)
#Description = Sclareol box1 (SB1) found at -827 of a plasma membrane ATP binding cassette (ABC) transporter gene (NpABC1) in N. plumbaginifolia; Mutation in SB3 completely abolished sclareolide-mediated expression; See S    ;
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000434
#Short = SB3NPABC1
#W = 15
#Organisms = Nicotiana plumbaginifolia (tobacco)
#Description = Sclareol box3 (SB3) found at -216 of a plasma membrane ATP binding cassette (ABC) transporter gene (NpABC1) in N. plumbaginifolia; Mutation in SB3 completely abolished sclareolide-mediated expression; See S    ;
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0

#ID = S000500
#Short = SBOXATRBCS
#W = 8
#Organisms = Arabidopsis thaliana
#Description = "S-box" conserved in several rbcS promoters in Arabidopsis; ABI4 binding site; "Important for the sugar and ABA responsiveness of CMA5"(Acevedo-Hernandez et al., 2005);
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000288
#Short = SE1PVGRP18
#W = 24
#Organisms = bean (Phaseolus vulgaris)
#Description = "SE1 (Stem element 1)" found in the bean (P.v.) grp1.8 gene promoter; Located between -121 and -94; Enhances the expression strongly but unspecifically; See S000289, S000101 (SE2);
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000101
#Short = SE2PVGRP1
#W = 24
#Organisms = bean (Phaseolus vulgaris)
#Description = "SE2 (stem element 2)" of bean (P.v.) GRP1.8 gene; part of SE2 element;
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000391
#Short = SEBFCONSSTPR10A
#W = 7
#Organisms = Solanum tuberosum (potato)
#Description = Binding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response element; W=A/T;
0.0	0.5	0.0	0.5
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.5	0.0	0.0	0.5
0.0	1.0	0.0	0.0

#ID = S000006
#Short = SEF1MOTIF
#W = 9
#Organisms = soybean (Glycine max)
#Description = "SEF1 (soybean embryo factor 1)" binding motif; sequence found in 5'-upstream region (-640; -765) of soybean beta-conglicinin (7S globulin) gene; W=A/T;
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.5	0.0	0.0	0.5
0.5	0.0	0.0	0.5

#ID = S000115
#Short = SEF3MOTIFGM
#W = 6
#Organisms = soybean (Glycine max)
#Description = "SEF3 binding site"; Soybean (G.m.) consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4;
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000103
#Short = SEF4MOTIFGM7S
#W = 7
#Organisms = soybean (Glycine max)
#Description = "SEF4 binding site"; Soybean (G.m.) consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); "Binding with SEF4 (soybean embryo factor 4)"; R=A/G;
0.5	0.0	0.5	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.5	0.0	0.5	0.0

#ID = S000287
#Short = SGBFGMGMAUX28
#W = 10
#Organisms = soybean (Glycine max)
#Description = bZIP proteins SGBF-1 and SGBF-2 binding site in soybean (G.m.) GmAux28 gene promoter; see S000042;
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0

#ID = S000211
#Short = SITE1SORPS1
#W = 14
#Organisms = spinach (Spinacia oleracea)
#Description = Site 1 in the spinach (S.o.) rps1 promoter; S1F binding site; Nuclear genes encoding plastid ribosomal proteins are more highly expressed in leaves than in root; Involved in leaf-specific induction; Seems to be light-independent; Involved in negative regulation; Related to the light-responsive Box II of the pea rbcs-3A promoter; Related to GT elements; For a compilation of related GT elements and factors, see Villain et al. (1996); See S000215 (S1FSORPL21); S1 box=ATGGTA;
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0

#ID = S000212
#Short = SITE3SORPS1
#W = 14
#Organisms = spinach (Spinacia oleracea)
#Description = Site 3 of spinach (S.o.) rps1 promoter; S1F binding site; For a compilation of related GT elements and factors, see Villain et al. (1996);
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0

#ID = S000216
#Short = SITEIIAOSPCNA
#W = 9
#Organisms = rice (Oryza sativa)
#Description = "Site IIa" of rice (O.s.) PCNA (proliferating cell nuclear antigen) gene; Found at -197 to -188; Binding site for two nuclear proteins, PCF1 and PCF2 (Kosugi and Ohashi, 1997); Suggested to be involved in meristematic tissue-specific expression; Resemble the conserved motif (T/GGTCCCAT) found in promoter regions of auxin-regulated genes; See S000026 (AUXREPSIAA4);
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0

#ID = S000474
#Short = SITEIIATCYTC
#W = 6
#Organisms = Arabidopsis thaliana,Oryza sativa (rice)
#Description = "Site II element" found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites (Welchen et al., 2005); Y=C/T; See also S000308; Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and rice (Welchen and Gonzalez, 2006);)
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	0.5	0.0	0.5

#ID = S000217
#Short = SITEIIBOSPCNA
#W = 9
#Organisms = rice (Oryza sativa)
#Description = "Site IIb" of rice PCNA (proliferating cell nuclear antigen) gene; Found at -178 to -169; Binding site for two nuclear proteins, PCF1 and PCF2 (Kosugi and Ohashi, 1997); Suggested to be involved in meristematic tissue-specific expression; Resemble the conserved motif (T/GGTCCCAT) found in promoter regions of auxin-regulated genes; See S000026 (AUXREPSIAA4);
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000224
#Short = SITEIOSPCNA
#W = 8
#Organisms = rice (Oryza sativa)
#Description = "Site I" of rice (O.s.) PCNA (proliferating cell nuclear antigen) gene; Found at -201 to -194; Resemble G-box; May contribute in part to transcriptional activation;
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0

#ID = S000482
#Short = SORLIP1AT
#W = 5
#Organisms = Arabidopsis thaliana
#Description = one of "Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; SORLIP 1 is most over-represented, and most statistically singnificant; See also S000483, S000484, S000485, S000486 (all SORLIPs), and also S000487, S000488, S000489, S000490 (all SORLREPs); Over-represented in light-induced cotyledon and root common genes and root-specific genes (Jiao et al. 2005; see S000486);
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000483
#Short = SORLIP2AT
#W = 5
#Organisms = Arabidopsis thaliana
#Description = one of "Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; See also S000482, S000484, S000485, S000486 (all SORLIPs), and also S000487, S000488, S000489, S000490 (all SORLREPs);
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000484
#Short = SORLIP3AT
#W = 9
#Organisms = Arabidopsis thaliana
#Description = one of "Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; See also S000482, S000483, S000485, S000486 (all SORLIPs), and also S000487, S000488, S000489, S000490 (all SORLREPs);
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0

#ID = S000485
#Short = SORLIP4AT
#W = 9
#Organisms = Arabidopsis thaliana
#Description = one of "Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; See also S000482, S000483, S000484, S000486 (all SORLIPs), and also S000487, S000488, S000489, S000490 (all SORLREPs);
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0

#ID = S000486
#Short = SORLIP5AT
#W = 7
#Organisms = Arabidopsis thaliana
#Description = one of "Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; See also S000482, S000483, S000484, S000485 (all SORLIPs), and also S000487, S000488, S000489, S000490 (all SORLREPs); Over-represented in both light-induced cotyledon-specific and root-specific genes (Jiao et al. 2005; see S000482);
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0

#ID = S000487
#Short = SORLREP2AT
#W = 9
#Organisms = Arabidopsis thaliana
#Description = one of "Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also S000488, S000489, S000490 (all SORLREPs); and also S000482, S000483, S000484, S000485, S000486 (all SORLIPs);
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0

#ID = S000488
#Short = SORLREP3AT
#W = 9
#Organisms = Arabidopsis thaliana
#Description = one of "Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also S000487, S000489, S000490 (all SORLREPs); and also S000482, S000483, S000484, S000485, S000486 (all SORLIPs);
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000489
#Short = SORLREP4AT
#W = 9
#Organisms = Arabidopsis thaliana
#Description = one of "Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; Common in circadian-regulated promoters; See also S000487, S000488, S000490 (all SORLREPs); and also S000482, S000483, S000484, S000485, S000486 (all SORLIPs);
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0

#ID = S000490
#Short = SORLREP5AT
#W = 10
#Organisms = Arabidopsis thaliana
#Description = one of "Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also S000487, S000488, S000489 (all SORLREPs); and also S000482, S000483, S000484, S000485, S000486 (all SORLIPs);
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000183
#Short = SP8BFIBSP8AIB
#W = 8
#Organisms = sweet potato (Ipomoea batatas)
#Description = One of SPBF binding site (SP8a); Found at -155 of gSPO-A1 (sporamin) gene, and also at -880 of gB-Amy (beta-amylase) gene in sweet potato (I.b.); SP8BF recognizes both SP8a and SP8b sequences; See also SP8BFIBSP8BIB (S000184); SP8BF activity is also found in tobacco; "SP8a" found in the 5' upstream region of three differnt genes coding for sporamin and beta-amylase; Binding site of SPF1; SPF1 also binds to the SP8b; See S000184;
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0

#ID = S000184
#Short = SP8BFIBSP8BIB
#W = 7
#Organisms = sweet potato (Ipomoea batatas)
#Description = One of SPBF binding site (SP8b); Found at -330, -220, and -200 of gSPO-B1 (sporamin) gene, and also at -80 of gB-Amy (beta-amylase) gene; SP8BF recognizes both SP8a and SP8b sequences; See also SP8BFIBSP8AIB (S000183); SP8BF activity is also found in tobacco; "SP8b" found in the 5' upstream region of three differnt genes coding for sporamin and beta-amylase; Binding site of SPF1; SPF1 also binds to the SP8b; See S000184;
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0

#ID = S000154
#Short = SPHCOREZMC1
#W = 9
#Organisms = maize (Zea mays)
#Description = Core of Sph element; Core motif of Sph element in maize (Z.m.) C1 gene to which maize VP1 (viviparous 1) protein binds; VP1-responsive element; see RYREPEAT4 (S000010); VP1 gene is specifically required for expression of the maturation program in seed development; VP1 is a novel transcription factor possibly involved in potentiation of a seed-specific hormone response;
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000293
#Short = SPHZMC1
#W = 11
#Organisms = maize (Zea mays)
#Description = "Sph element" found in the maize (Z.m.) C1 gene promoter; Located between -142 and -132; Essential for VP1 activation; See S000154, S000294; VP1 gene is specifically required for expression of the maturation program in seed development; VP1 is a novel transcription factor possibly involved in potentiation of a seed-specific hormone response;
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000470
#Short = SREATMSD
#W = 6
#Organisms = Arabidopsis thaliana
#Description = "sugar-repressive element (SRE)" found in 272 of the 1592 down-regulated genes after main stem decapitation in Arabidopsis; See also S000471, S000472;
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000271
#Short = SRENTTTO1
#W = 13
#Organisms = tobacco (Nicotiana tabacum)
#Description = Stress responsive element (SRE) in tobacco (N.t.) retrotransposon Tto1; A 13 bp cis-regulatory element in the LTR promoter of the tobacco retrotransposon Tto1; Involved in responsiveness to tissue culture, wounding, methyl jasmonate and fungal elicitors; Contains a conserved motif, Box L;
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000186
#Short = SURE1STPAT21
#W = 9
#Organisms = potato (Solanum tuberosum)
#Description = Sucrose Responsive Element (SURE); A motif conserved among genes regulated by sucrose; See also SURE2STPAT21 (S000185); Found between -184 and -156 bp in the patatin (a major tuber protein) gene promoter of potato (S.t.);
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000185
#Short = SURE2STPAT21
#W = 9
#Organisms = potato (Solanum tuberosum)
#Description = Sucrose Responsive Element 2 (SURE2); A motif conserved among genes regulated by sucrose; See also SURE1ST (S000186); Found between -184 and -156 bp in the patatin (a major tuber protein) gene promoter of potato (S.t.);
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000441
#Short = SUREAHVISO1
#W = 25
#Organisms = Hordeum vulgare (barley)
#Description = "SURE-a"; Sugar-responsive element found in barley (H. vulgare) iso1 (encoding isoamylase1) promoter at -597 to -573; Highly similar to SURE of potato class-1 putative promoter; SUSIBA2 (WRKY transcription factor) binding site;
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000499
#Short = SURECOREATSULTR11
#W = 5
#Organisms = Arabidopsis thaliana
#Description = Core of sulfur-responsive element (SURE) found in the promoter of SULTR1;1 high-affinity sulfate transporter gene in Arabidopsis; SURE contains auxin response factor (ARF) binding sequence (GAGACA)(see S000270 ARF:TGTCTC; its complementary seq is GAGACA), and this core sequence is a part of it; this core seq is involved in -S response; Beware of other SURE (sucrose responsive element) !!;
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000123
#Short = SV40COREENHAN
#W = 8
#Organisms = virus,plant,pea (Pisum sativum),Arabidopsis thaliana
#Description = "SV40 core enhancer"; Similar sequences found in rbcS genes; W=A/T;
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.5	0.0	0.0	0.5
0.5	0.0	0.0	0.5
0.3333333333333333	0.3333333333333333	0.0	0.3333333333333333
0.0	0.0	1.0	0.0

#ID = S000458
#Short = T/GBOXATPIN2
#W = 6
#Organisms = Lycopersicon esculentum (tomato),Arabidopsis thaliana
#Description = "T/G-box" found in tomato proteinase inhibitor II (pin2) and leucine aminopeptidase (LAP) genes; Involved in jasmonate (JA) induction of these genes; bHLH-Leu zipper JAMYC2 and JAMYC10 proteins specifically recognaize this motif (Boter et al., 2004);
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0

#ID = S000387
#Short = TAAAGSTKST1
#W = 5
#Organisms = Solanum tuberosum (potato)
#Description = TAAAG motif found in promoter of Solanum tuberosum (S.t.) KST1 gene; Target site for trans-acting StDof1 protein controlling guard cell-specific gene expression; KST1 gene encodes a K+ influx channel of guard cells; See S000265;
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0

#ID = S000257
#Short = TACBBFNTEAS4
#W = 14
#Organisms = tobacco (Nicotiana tabacum)
#Description = TacBBF (TAC box binding factor) binding site in tobacco (N.t.) 5-epi-aristolochene synthase (EAS4) gene; Required for elicitor-inducibility; EAS is involved in sesquiterpene phytoalexin biosynthesis; Found between -245 and -232; Appears to function as a silencer or repressor of EAS gene expression;
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0

#ID = S000108
#Short = TATABOX1
#W = 10
#Organisms = rice (Oryza sativa),bean (Phaseolus vulgaris)
#Description = "TATA box"; TATA box found in the 5'upstream region of rice alpha-amylase; TATA box found in beta-phaseolin promoter (Grace et al.); sequence and spacing of TATA box elements are critical for accurate initiation (Grace et al.);
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000109
#Short = TATABOX2
#W = 7
#Organisms = pea (Pisum sativum),tobacco (Nicotiana tabacum),bean (Phaseolus vulgaris)
#Description = "TATA box"; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter (Grace et al.); sequence and spacing of TATA box elements are critical for accurate initiation (Grace et al.);
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000110
#Short = TATABOX3
#W = 7
#Organisms = sweet potato (Ipomoea batatas)
#Description = "TATA box"; TATA box found in the 5'upstream region of sweet potato sporamin A gene;
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000111
#Short = TATABOX4
#W = 7
#Organisms = sweet potato (Ipomoea batatas),bean (Phaseolus vulgaris)
#Description = "TATA box"; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter (Grace et al.); sequence and spacing of TATA box elements are critical for accurate initiation (Grace et al.);
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000203
#Short = TATABOX5
#W = 6
#Organisms = pea (Pisum sativum)
#Description = "TATA box"; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysis;
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0

#ID = S000400
#Short = TATABOXOSPAL
#W = 7
#Organisms = Oryza sativa (rice)
#Description = Binding site for OsTBP2, found in the promoter of rice pal gene encoding phenylalanine ammonia-lyase; OsTFIIB stimulated the DNA binding and bending activities of OsTBP2 and synergistically enhanced OsTBP2-mediated transcription from the pal promoter;
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000340
#Short = TATAPVTRNALEU
#W = 8
#Organisms = Phaseolus vulgaris,maize (Zea mays)
#Description = "TATA-like motif"; A TATA-like sequence found in Phaseolus vulgaris tRNALeu gene promoter; Frequently observed upstream of plant tRNA genes; Found in maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene promoter; Binding site of TATA binding protein (TBP);
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0

#ID = S000416
#Short = TATCCACHVAL21
#W = 7
#Organisms = barley (Hordeum vulgare)
#Description = "TATCCAC box" is a part of the conserved cis-acting response complex (GARC) that most often contain three sequence motifs, the TAACAAA box (see S000181), or GA-responsive element (GARE); the pyrimidine box, CCTTTT (see S000259); and the TATCCAC box, which are necessary for a full GA response;
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000403
#Short = TATCCAOSAMY
#W = 6
#Organisms = Oryza sativa (rice)
#Description = "TATCCA" element found in alpha-amylase promoters of rice (O.s.) at positions ca.90 to 150bp upstream of the transcription start sites; Binding sites of OsMYBS1, OsMYBS2 and OsMYBS3 which mediate sugar and hormone regulation of alpha-amylase gene expression; See also S000021 (AMYBOX2); S000256 (TATCCAY motif);
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000256
#Short = TATCCAYMOTIFOSRAMY3D
#W = 7
#Organisms = rice (Oryza sativa)
#Description = "TATCCAY motif" found in rice (O.s.) RAmy3D alpha-amylase gene promoter; Y=T/C; a GATA motif as its antisense sequence; TATCCAY motif and G motif (see S000130) are responsible for sugar repression (Toyofuku et al. 1998);
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.5	0.0	0.5

#ID = S000383
#Short = TBOXATGAPB
#W = 6
#Organisms = Arabidopsis thaliana
#Description = "Tbox" found in the Arabidopsis thaliana (A.T.) GAPB gene promoter; Located between  -94 and -89 (T1) and also between -84 and -79 (T2); Mutations in the "Tbox" resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.;
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0

#ID = S000159
#Short = TCA1MOTIF
#W = 10
#Organisms = barley (Hordeum vulgare),tobacco (Nicotiana tabacum)
#Description = TCA-1 (tobacco nuclear protein 1) binding site; Related to salicylic acid-inducible expression of many genes; Found in barley beta-1,3-glucanase and over 30 different plant genes which are known to be induced by one or more forms of stress; A similar sequence (TCATTTCTT) was found in tobacco Tnt1 retrotransposon promoter (Mhiri et al., 1997);
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0

#ID = S000266
#Short = TDBA12NTCHN50
#W = 12
#Organisms = tobacco (Nicotiana tabacum)
#Description = TDBA12 binding site found in tobacco (N.t.) basic class I chitinase gene (CHN50); Elicitor response element; TDBA12 belongs to WRKY proteins that appear to be unique to plants; TDBA12 is activated by TMV infection in resistant tobacco plant and by plant defense signal molecule SA;
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000397
#Short = TE2F2NTPCNA
#W = 8
#Organisms = tobacco (Nicotiana tabacum)
#Description = "te2f-2" found in the promoter of tobacco PCNA gene; Located between -84 and -77; Binding site of OsE2F1 and OsE2F2; Involved in transcriptional activation in actively dividing cells and tissue;
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0

#ID = S000311
#Short = TEF1BOXATA1
#W = 24
#Organisms = Arabidopsis (Arabidopsis thaliana)
#Description = "tef1 box" found in the Arabidopsis (A.t.) EF-1 alpha A1 gene promoter; Conserved in the A.t. EF-1 alpha gene promoters; Involved in the activation of EF-1 alpha gene; Involved in the transcriptional activation of plant genes that are overexpressed in cycling cells; Conserved in the promoters of genes for products related to the translational apparatus;
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000309
#Short = TEFBOXATEEF1AA1
#W = 16
#Organisms = Arabidopsis (Arabidopsis thaliana)
#Description = "tef-box" found in the Arabidopsis (A.t.) eEF1AA1 gene promoter; An activating sequence associated with telo-box (S000308); Required for the gene expression in root primordia; Acts co-operatively with telo-box; See S000308;
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000308
#Short = TELOBOXATEEF1AA1
#W = 9
#Organisms = Arabidopsis (Arabidopsis thaliana)
#Description = "telo-box" (telomere motif) found in the Arabidopsis (A.t.) eEF1AA1 gene promoter; Conserved in all known plant eEF1A gene promoters; Found in the 5' region of numerous genes encoding components of the translational apparatus; Required for the activation of expression in root primordia; Acts co-operatively with tef-box; Binding site of AtPur alpha-1; See S000309, S000474;
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000247
#Short = TGA1ANTPR1A
#W = 16
#Organisms = tobacco (Nicotiana tabacum)
#Description = TGA1a binding site in tobacco (N.t.) PR1a gene; as-1-like sequence; Contains two TGACG elements reminiscent of activation sequence-1 (as-1); See other as-1-like sequences; TGA1a is preferentially expressed in root tip meristems; TGA1a may contribute to the expression of GST isoenzymes, especially in root tip meristems;
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0

#ID = S000377
#Short = TGACGTVMAMY
#W = 6
#Organisms = Vigna mungo
#Description = "TGACGT motif" found in the Vigna mungo (V.m.) alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seeds; See S000234;
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0

#ID = S000422
#Short = TGTCACACMCUCUMISIN
#W = 7
#Organisms = Cucumis melo L. (melon)
#Description = "TGTCACA motif" found in the region (from -254 to -215) of cucumisin (a subtilisin-like serine protease) in the fruit of melon (Cucumis melo L.); A novel enhancer element necessary for fruit-specific expression of the cucumisin gene;
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000473
#Short = TL1ATSAR
#W = 11
#Organisms = Arabidopsis thaliana
#Description = "TL1", a consensus sequence overrepresented in the promoter regions of all 13 NPR1-responsive ER-resident genes surveyed; NPR1 is "Nonexpressor of pathogenesis-related genes 1", also known as NIM1;
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000112
#Short = TOPOISOM
#W = 15
#Organisms = fruit fly,Drosophila melanogaster,fly
#Description = Topoisomerase cleavage site consensus sequence;  Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR);  W=T/A,
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.25	0.25	0.25	0.25
0.5	0.0	0.0	0.5
1.0	0.0	0.0	0.0
0.0	0.5	0.0	0.5
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.25	0.25	0.25	0.25
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.0	0.0	1.0	0.0

#ID = S000201
#Short = TRANSINITDICOTS
#W = 8
#Organisms = dicots
#Description = Context sequence of translational initiation codon in dicots; M=A/C;
1.0	0.0	0.0	0.0
0.5	0.5	0.0	0.0
0.25	0.25	0.25	0.25
1.0	0.0	0.0	0.0
0.25	0.25	0.25	0.25
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0

#ID = S000202
#Short = TRANSINITMONOCOTS
#W = 8
#Organisms = monocots
#Description = Context sequence of translational initiation codon in monocots; R=A/G; M=A/C;
0.5	0.0	0.5	0.0
0.5	0.5	0.0	0.0
0.25	0.25	0.25	0.25
1.0	0.0	0.0	0.0
0.25	0.25	0.25	0.25
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0

#ID = S000113
#Short = TRANSTART
#W = 12
#Organisms = rice (Oryza sativa)
#Description = plant consensus sequence for translation start site;
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000471
#Short = UP1ATMSD
#W = 9
#Organisms = Arabidopsis thaliana
#Description = "Up1" motif found in 162 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis; W=A/T; See also S000470, S000472;
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.5	0.0	0.0	0.5
0.5	0.0	0.0	0.5
0.5	0.0	0.0	0.5

#ID = S000472
#Short = UP2ATMSD
#W = 8
#Organisms = Arabidopsis thaliana
#Description = "Up2" motif found in 193 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis; W=A/T; See also S000470, S000471;
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0

#ID = S000428
#Short = UPRE1AT
#W = 11
#Organisms = Arabidopsis thaliana
#Description = "ERSEII-like sequence" found in the plant UPRE (unfolded protein response element) in A.t.; See S000429; Either of ERSEII or XBP1 binding sites is essential and sufficient for the UPR; See S000425, S000426;
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0

#ID = S000429
#Short = UPRE2AT
#W = 10
#Organisms = Arabidopsis thaliana
#Description = "XBP1 binding site-like sequence" found in the plant UPRE (unfolded protein response element) in A.t.; See S000428; Either of ERSEII or XBP1 binding sites is essential and sufficient for the UPR; See S000425 (CCACGTCA), S000426;
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0

#ID = S000425
#Short = UPRMOTIFIAT
#W = 8
#Organisms = Arabidopsis thaliana
#Description = "Motif I" in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc.; See S000429 (CCACGTCATC); See also S000426, S000428, S000429;
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000426
#Short = UPRMOTIFIIAT
#W = 19
#Organisms = Arabidopsis thaliana
#Description = "Motif II" in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc.; See S000425, S000428, S000429;
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0

#ID = S000456
#Short = VOZATVPP
#W = 15
#Organisms = Arabidopsis thaliana
#Description = "VOZ-binding sequence" found in the promoter of A. thaliana V-PPase (vacuolar H+-pyrophosphatase) gene; Involved in its expression during pollen development; one-zinc finger;(Mitsuda et al., 2004);
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
0.25	0.25	0.25	0.25
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0

#ID = S000249
#Short = VSF1PVGRP18
#W = 9
#Organisms = French bean (Phaseolus vulgaris),tomato (Lycopersicon esculentum),tobacco (Nicotiana tabacum)
#Description = VSF-1 binding site in French bean (P.v.) grp1.8 gene promoter; VSF-1 is a tomato bZIP transcription factor; VSF-1 binding site is found in 28 bp vs-1 element; This sequence controls vascular gene expression in transgenic tobacco; "VS-1" found in bean grp1.8 gene promoter; Located between -203 and -176; Partially overlaps with NRE; Confers xylem-specific expression;
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0

#ID = S000241
#Short = WARBNEXTA
#W = 20
#Organisms = Brassica napus
#Description = "WAR (wounding activating region)" in Brassica napus (B.n.) extA extensin gene;
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0

#ID = S000310
#Short = WBBOXPCWRKY1
#W = 7
#Organisms = Ipomoea batatas (sweet potato),Triticum aestivum (wheat),Hordeum vulgare (barley),Avena fatua (wild oat),Petroselium crispum (parsley),Arabidopsis thaliana
#Description = "WB box"; WRKY proteins bind specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box; Found in amylase gene in sweet potato, alpha-Amy2 genes in wheat, barley, and wild oat, PR1 gene in parsley, and a transcription factor gene in Arabidopsis; The motif was initially registered in PLACEdb as TTGACT, and was corrected to TTGACY on 22 June, 2006; Y=C/T;
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.5	0.0	0.5

#ID = S000390
#Short = WBOXATNPR1
#W = 5
#Organisms = Arabidopsis thaliana
#Description = "W-box" found in promoter of Arabidopsis thaliana (A.t.) NPR1 gene; Located between +70 and +79 in tandem; They were recognized specifically by salicylic acid (SA)-induced WRKY DNA binding proteins; See S000142 (SQ=TTGACC); See S000310 (SQ=TTTGACY); A cluster of WRKY binding sites act as negative regulatory elements for the inducible expression of AtWRKY18 (Chena and Chen, 2002); See also S000142;
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000448
#Short = WBOXGACAD1A
#W = 14
#Organisms = Gossypium arboreum (cotton)
#Description = W-box found in the promoter region of the CAD1-A (cotton (+) delta-cadinene synthase-A) gene (located in the region -340 to -327) of cotton (G.a); Binding site of GaWRKY1; GaWRKY1 regulates sesquiterpene biosynthesis in cotton; See S000390 (TTGAC), S000142 (TTGACC);
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000442
#Short = WBOXHVISO1
#W = 5
#Organisms = Hordeum vulgare (barley)
#Description = SUSIBA2 bind to W-box element in barley iso1 (encoding isoamylase1) promoter;
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0

#ID = S000508
#Short = WBOXNTCHN48
#W = 6
#Organisms = Nicotiana tabacum (tobacco)
#Description = "W box" identified in the region between -125 and -69 of a tobacco class I basic chitinase gene CHN48; NtWRKY1, NtWRKY2 and NtWRKY4 bound to W box; NtWRKYs possibly involved in elicitor-respsonsive transcription of defense genes in tobacco; Y=C/T; see also S000442 (TGACT) and S000447 (TGAC);
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.5	0.0	0.5

#ID = S000457
#Short = WBOXNTERF3
#W = 5
#Organisms = Nicotiana tabacum (tobacco)
#Description = "W box" found in the promoter region of a transcriptional repressor ERF3 gene in tobacco; May be involved in activation of ERF3 gene by wounding;(Nishiuchi et al., 2004) Y=C/T; See S000142, S000390, S000442, S000447;
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.5	0.0	0.5

#ID = S000495
#Short = WINPSTPIIIK
#W = 10
#Organisms = Solanum tuberosum (potato)
#Description = Binding site of wound-inducible nuclear protein from wounded tomato leaves; Found in the promoter region of a protease inhibitor IIK gene from potato (S.t.);
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0

#ID = S000496
#Short = WRECSAA01
#W = 10
#Organisms = Cucumis sativas (cucumber)
#Description = "Wound-responsive element (WRE)" found in the promoter region of cucumber (C.s.) ascorbate oxidase gene, CsAAO1; Binding site of proteins in tobacco nuclear extracts; W=A/T; S=C/G;
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.5	0.0	0.0	0.5
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.5	0.5	0.0
1.0	0.0	0.0	0.0

#ID = S000447
#Short = WRKY71OS
#W = 4
#Organisms = Oryza sativa (rice),Petroselinum crispum (parsley)
#Description = "A core of TGAC-containing W-box" of, e.g., Amy32b promoter; Binding site of rice WRKY71, a transcriptional repressor of the gibberellin signaling pathway; Parsley WRKY proteins bind specifically to TGAC-containing W box elements within the Pathogenesis-Related Class10 (PR-10) genes (Eulgem et al., 1999); See S000390 (TTGAC), S000442 (TGACT);
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0

#ID = S000433
#Short = WUSATAg
#W = 7
#Organisms = Oryza sativa (rice)
#Description = Target sequence of WUS in the intron of AGAMOUS gene in Arabidopsis; See Lohmann et al. Cell 105:793-803 (2003);
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	1.0	0.0

#ID = S000510
#Short = XYLAT
#W = 8
#Organisms = Arabidopsis thaliana
#Description = cis-element identified among the promoters of the "core xylem gene set";
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0

#ID = S000365
#Short = YREGIONNTPRB1B
#W = 26
#Organisms = Tobacco (Nicotiana tabacum)
#Description = "Y region" found in tobacco (N.t.) PRB-1b gene promoter; Located at -179 to -154; Binding site of nuclear protein; Required for ethylene induction; See S000364;
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0

#ID = S000321
#Short = ZDNAFORMINGATCAB1
#W = 8
#Organisms = Arabidopsis thaliana
#Description = "Z-DNA-forming sequence" found in the Arabidopsis (A.t.) chlorophyll a/b binding protein gene (cab1) promoter; Involved in light-dependent developmental expression of the gene; "Z-box"; Activation of Z-box containing promoters is regulated by downstream regulatory components, COP1 and HY5; phyB and CRY1 photoreceptors act redundantly to induce Z-box containing promoters in white light;
1.0	0.0	0.0	0.0
0.0	0.0	0.0	1.0
1.0	0.0	0.0	0.0
0.0	1.0	0.0	0.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0
0.0	0.0	1.0	0.0
0.0	0.0	0.0	1.0

